Detail information of GWHGAAEX000517/evm.TU.scaffold_1.244
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|719986820|ref|XP_010251818.1| | 6.51E-155 | PREDICTED: agmatine coumaroyltransferase-2-like [Nelumbo nucifera] |
| Swissprot | tr|A9ZPJ7|AGCT2_HORVU | 7.00E-99 | Agmatine coumaroyltransferase-2 {ECO:0000303|PubMed:18270436, ECO:0000312|EMBL:BAF97627.1} |
| trEMBL | tr|W1PGD5|W1PGD5_AMBTC | 1.00E-135 | Uncharacterized protein {ECO:0000313|EMBL:ERN06671.1} |
| TAIR | AT5G48930 | 4.00E-49 | hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000008 | 10418184 | 10420282 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000517
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02458.14 | Transferase | 2 | 426 | 2.20E-53 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K13065 | E2.3.1.133, HCT | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Phenylpropanoid biosynthesis | map00940 | ||
| Flavonoid biosynthesis | map00941 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016747 | Molecular Function | transferase activity, transferring acyl groups other than amino-acyl groups |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 13.530 |
| SRR2545915 | Juvenile tuber | 58.450 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 210.010 |
| SRR5643514 | five period of Gastrodia elata | 54.180 | |
| SRR5643515 | five period of Gastrodia elata | 366.980 | |
| SRR5643524 | five period of Gastrodia elata | 151.110 | |
| SRR5643525 | five period of Gastrodia elata | 300.700 | |
| SRR5643528 | five period of Gastrodia elata | 434.200 | |
| SRR5643658 | five period of Gastrodia elata | 337.210 | |
| SRR5643659 | five period of Gastrodia elata | 126.370 | |
| SRR5643660 | five period of Gastrodia elata | 83.630 | |
| SRR5643661 | five period of Gastrodia elata | 156.920 | |
| SRR5643662 | five period of Gastrodia elata | 101.390 | |
| SRR5643663 | five period of Gastrodia elata | 75.790 | |
| SRR5643664 | five period of Gastrodia elata | 62.540 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 47.920 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 73.150 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 62.900 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 47.620 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 101.590 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 116.830 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 112.190 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 115.110 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 72.110 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 71.800 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 105.750 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 105.750 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 92.38 |
| Juven | Juvenile tuber | 7.65 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1,135.20 | |
| Mother_Juven | Mother tuber of Juvenile | 391.73 |