Detail information of GWHGAAEX000525/evm.TU.scaffold_1.255


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|264678761|ref|YP_003278668.1|2.00E-10RNA-binding region RNP-1 [Comamonas testosteroni CNB-2]
KOGKOG01182.00E-99FOG: RRM domain
nrgi|743801649|ref|XP_010926404.1|0PREDICTED: DAZ-associated protein 1-like [Elaeis guineensis]
Swissprottr|Q8W034|RNP1_ARATH8.00E-31Heterogeneous nuclear ribonucleoprotein 1
trEMBLtr|D7SVX4|D7SVX4_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI21423.3}
TAIRAT4G369602.00E-99RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000081072960610753347-
Transcript Sequence

Network for GWHGAAEX000525

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_15631.70E-13
PF00076.21RRM_1931503.00E-10
PF00076.21RRM_12262801.60E-13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14411MSI mRNA surveillance pathway map03015

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms69.380
SRR2545915Juvenile tuber64.770
SRP108465SRR5643513five period of Gastrodia elata60.580
SRR5643514five period of Gastrodia elata51.740
SRR5643515five period of Gastrodia elata58.620
SRR5643524five period of Gastrodia elata58.360
SRR5643525five period of Gastrodia elata49.330
SRR5643528five period of Gastrodia elata63.740
SRR5643658five period of Gastrodia elata48.140
SRR5643659five period of Gastrodia elata70.130
SRR5643660five period of Gastrodia elata78.350
SRR5643661five period of Gastrodia elata69.870
SRR5643662five period of Gastrodia elata68.290
SRR5643663five period of Gastrodia elata62.780
SRR5643664five period of Gastrodia elata60.880
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_163.030
SRR6049655Rhizomagastrodiae_C368-T10_good_138.740
SRR6049656Rhizomagastrodiae_C368-T07_good_156.630
SRR6049657Rhizomagastrodiae_C368-T07_good_163.700
SRR6049658Rhizomagastrodiae_C368-T04_good_162.250
SRR6049659Rhizomagastrodiae_C368-T04_good_155.130
SRR6049660Rhizomagastrodiae_C368-T01_good_160.100
SRR6049661Rhizomagastrodiae_C368-T04_good_159.150
SRR6049662Rhizomagastrodiae_C368-T01_good_163.750
SRR6049663Rhizomagastrodiae_C368-T01_good_162.010
SRR6049664Rhizomagastrodiae_C368-T10_good_163.440
SRR6049665Rhizomagastrodiae_C368-T10_good_163.440
SRP279888GastroGastrodia elata tuber 68.50
JuvenJuvenile tuber75.68
Mother_GastroMother tuber of Gastrodia elata 52.27
Mother_JuvenMother tuber of Juvenile 84.83