Gene detail

Detail information of GWHGAAEX000538/evm.TU.scaffold_1.274

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2155	Tubulin-tyrosine ligase-related protein
nr	gi\|672107934\|ref\|XP_008782531.1\|	PREDICTED: tubulin--tyrosine ligase-like protein 12 [Phoenix dactylifera]
trEMBL	tr\|M0RJ31\|M0RJ31_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P17560_001}
TAIR	AT1G77550	tubulin-tyrosine ligases;tubulin-tyrosine ligases

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000008	11653093	11707627	-

Transcript Sequence
>GWHTAAEX000538 TGTGTGAGATGTATACAGATAAAATGAAGCATTTCTTTATTTGGAATTAAAAACAAAACCATACCCTGTTCACTTCCACTCGCTACCTCACTGCCGAAGCCATGCTTCGTCCTTACCAGAGAGCAGACTTCGATGATTTCGCGAAAGTGCACGCCATCCTCCTCGCTTCCTCTGGAATCCCGCCGGCACTCCACCGGCAGCTATTCTACAAACTTTTCTCGGAATCGTTCGACGGCGGCAGCTTCTTCACCATCGAGCAGTGCGAGGGCGGACGGCAGCGTCTTCTCCTATCTGCCCGATCTCTTCCTATGGAGTCTGACATCTTTCTCATTGACCATGCTTGGTCTTTTCGCCTATCTGATGCCCGCAAGCAGTTAAAGGAAGTGCCGGGGCTGGTTGAGAGGATGGCTGCTCTGATGTGCGTTGATATGGATTTGGTATTGAATTCTTTTGAATTCAATCAGGAGCTTCATGAGAATGGATTCCCTAAGAACGTTTTGGAAATTCTGGAGAGGGAAATGGAAAGGGGCAGTCATTCTGCTACTTGGCTGGAGCTAGAGGAACTCGGAATCAATGATGACATGCTGTCTTCCATGGACTTGTCTTCAAGATTTCCAAATCTGGTTGCTCTTAACCTGTGGGGAAACAGGCTTCGAAATGCAGATGCAGTTATCCAGGAAATTACGAAATGCAAAAATTTGAAGGCTTTATGGTTGAATGATAACCCAGTTTTGGAGAATTGTTTTGTTGCAAATGCACTTCACGAAGGCATTCCTGGTCTGGAAATTTATAATTCGCGCTTCACTATTAATTCTTCTAAGTGGGCATTGGGTTTCTGCGGAGGCATTATAACAATGGACAATTCTGAGTTTAATTCTGAAACTGCAGATGCGTTGGGAGCAATCACTTCACTTGATTTATCATATAGATATATCAGCAATCTTCCCAAGGCTTTTTCTCCTGCTGTTCTGTCTTCCCTAGCACATTTAAATCTCAAAGGAAACCATCTGGATGGTAGTGCACCTGATGATCTACTAAATCTCGTAATGAGATTCACTTGTTTACTCGAATTAGAGGTGGACATTCCAGGTCCTCTTGGAAACAGTGCACTGCAGATTCTGCAATCTCTTCCTAAATTATCTTCATTGAATGGTATCAATGCATCAAGCATCCTAGAAGGAAATCATGATGATTCTGTTTTAAGACCACGTTTTCCAGACTGGACTTCTACTCAAACTCTAGTTGATAGGGTTACTGACGCAATGTGGCTCTATTTAATGACATATAGACTTGCTGATGAGGAAAAGATAGATGAAACATCTGTTTGCTATGTTATGGATGAAGTAGGTTCAGCCTTACGACATAGTGAGAAGGCGAACTTCAGATTAGCACCTTTTCTGTACATGCCTGAAGGAAAGCTTGAATCAGCAGTAAGCTATTCAGTGTTGTGGCCAACTGTGAATGTCAATTGTGGGGACGAATGTACTCGTGATTTCTTATTTGGCATTGGAGAGGAGAAACAACGTTCTGCTAGGCTTACGGCATGGTTCCATACATCGGAATGTTACTTTATTCAGGAGTTCAAATGTTACAGACGCCATCTTGAATCAAAAAGACCTTTCCCTTCTAATAAAGTTACTTCCATTTTTAATTGTATTCTTTCAAGCAACAAGCGTCCTCTCCATGTCTATACAGACATACCACAGGTGGAGGAATATTTATGTCGGCCAGAGTTTGTTTTAACAACTGATCCAAAGGGTGCTGACATTATTTGGGCCAGCATACAAGTTGATGAAGAGGTGAGAAAGTCTGTTGGAATTACATATGATCAGTATATTAATCAATTCCCTTTTGAAGCTTGCCTAGTCATGAAGCATCACCTAGCTGAGACTATTCATGAGGCATATGGTTCTCCTGCTTGGCTTCAGTCTACATATAACTTAGAGACACAACTTCCTCAATTCATAGGAGATTACCTCACAAGGAAAGATGCAGGCCTTGACAACTTGTGGATTTTAAAGCCATGGAATATGGCACGGACCATTGACACTACTGTCACTGGTGATCTATCCGCTATTATCCGTCTCATGGAAACTGGCCCTAAAATATGTCAAAAGTATATTGACCGCCCTGCATTATTCAGGGGAAAAAAATTTGACCTTCGCTACATTGTCTTGATTCGCAGCATGAAGCCCTTGGAAATTTTTCTATTTGATATTTTTTGGGTTAGGTTGGCTAATAATCAGTACAGTTTGGAAAAAAAAAGCCTTTTTGAGTATGAAACTCATTTTACCGTGATGAATTATATGGGAAGACTAAATCACATGAACACACCTGAATTTGTACGAGAGTTTGAAATGGAGCATAAAGTGAAATGGTTGGATATCCATCAAAGGATAAAGAATATGATCAGATCAGTGTTTGATTCAGCTGCAATGGTACACCCTGAGATGCAAGCTCCTTTTTCAAGGGCTATGTATGGAGTGGATGTCATGGTGGACCATTTGTTCATGCCAAAGATTTTAGAGGTGACATATTGCCCTGATTGCACCAGAGCATGTAAGTATGATACCGAAGCTGTTGTTGGAGGACGTGTCTTCAAAGGCCAGGATTTTTTCAATACTGTGTTTGGGTGCCTCTTCCTTGGAGAAATGAATCACGTAACCCCTTTGTAACCAAATTTATGCTTATTCCAAGCTCTTGATTTTTTTTGTTTGTATTTAACTTAGTTATATTAAGTTTTTTTATTTTTTTTGTTTAGGGGAAATTTCATGCATTCCATTAAAATTCTTTATAAAAAGTCTTTTATGAATATTTGTACCTGTAGAATGTCTTAGCCTAAAATTTGATTTTAATACATCGGAAGATGCGCCTGTGCTGCATAAATTACAGTTATTAATTCATTAGCATTTCGCTTTCAG

Network for GWHGAAEX000538

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03133.14	TTL	575	825	2.40E-51

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006464	Biological Process	cellular protein modification process
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	20.910
SRP064423	SRR2545915	Juvenile tuber	18.760
SRP108465	SRR5643513	five period of Gastrodia elata	9.960
	SRR5643514	five period of Gastrodia elata	12.220
	SRR5643515	five period of Gastrodia elata	9.580
	SRR5643524	five period of Gastrodia elata	8.810
	SRR5643525	five period of Gastrodia elata	12.360
	SRR5643528	five period of Gastrodia elata	11.240
	SRR5643658	five period of Gastrodia elata	13.090
	SRR5643659	five period of Gastrodia elata	8.870
	SRR5643660	five period of Gastrodia elata	7.440
	SRR5643661	five period of Gastrodia elata	7.920
	SRR5643662	five period of Gastrodia elata	7.740
	SRR5643663	five period of Gastrodia elata	8.410
	SRR5643664	five period of Gastrodia elata	7.810
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	12.670
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	13.570
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	14.560
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	14.940
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	16.480
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	17.110
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	15.770
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	16.140
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	17.590
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	17.780
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	13.410
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	13.410
SRP279888	Gastro	Gastrodia elata tuber	9.13
	Juven	Juvenile tuber	11.64
	Mother_Gastro	Mother tuber of Gastrodia elata	6.12
	Mother_Juven	Mother tuber of Juvenile	5.83