Gene detail

Detail information of GWHGAAEX000542/evm.TU.scaffold_1.279

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743761548\|ref\|XP_010942826.1\|	PREDICTED: glucan endo-1,3-beta-glucosidase 7 [Elaeis guineensis]
Swissprot	tr\|Q9M069\|E137_ARATH	Glucan endo-1,3-beta-glucosidase 7 (Precursor)
trEMBL	tr\|J9Z4Z2\|J9Z4Z2_ELAGV	Glucan endo-1,3-beta-glucosidase {ECO:0000313\|EMBL:AFS50098.1}
TAIR	AT2G16230	O-Glycosyl hydrolases family 17 protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000008	11863685	11876251	-

Transcript Sequence
>GWHTAAEX000542 GTGGGAATGTGGGCTTGTCACTCGGGCATCCGACCACCGTAGTAAAATGTTACGCGCAAATATTCCACCAGCTCCATTAATTCAAACCCTCTTTTGCCCTTACCGTATTCTCGTTATTACGAATTCAACCCGCCGCCCCTTTATATCTTATGCCATCTGCGTCCCCTTTTCTCTGATCTCGACACCTCTCAGGTCATGGAGGCGATTTCAAGCGTCTCGTTCGCGATGGCAGCCCTCTTGCTCAGCTTCTTTGTCTCCTCTGCAAATTCGCAGGAGTTCATCGGCGTGAACTACGGTCAGATGGCAGACAATCTCCCGACGCCTTCGGCGACCGTGTCGCTCCTCCGATCAACGACGATCGGAAAACTCCGTCTCTACGGCGCGGACGCCGGCATCCTCCGCGCCCTCTCGGGCAGCCAAATCTCCGCCATTATCGGCGCCTCAAACGCCGAAATCCCATCTCTCGCCGGCGACCCCTCGGCGGCATCCCGATGGGTTTCCTCCAACGTCCTCCCCTTCGTCCCTTCCACCTCCATCTCCGCCATTTCCGTGGGAAACGAAGCTCTCTCGTTCGGCGATCCCTCCCTGGCCTCCCAGCTCCTTCCTGCGATGCAGAACCTCCAATCGGCCCTCACCGCCCCCTCGTCCCCTCCGGCCGCCGCATCCATCAAGGTCTCCTCCGTCCATTCCATGGCCCTTTTATCCCGATCCGAGCCTCCCTCCTCCGGCGCATTTGGCTCCGACATCTCAGCCGTTCTGGATTTCCTCAACCGCACCGGGTCGCCCTTCATGATCAATCCCTACCCGTTCTTCGCCTACCGAAGCGATCCGCGGCCGGAAACCCTAGCGTTCTGCCTGTTCCAGCCCAATCCGGGCCGATTTGACGCCAGGAGCGGGGCCACGTACTCTAACATGTTCGACGCGCAGGTCGACGCGGTGCGCTCGGCTCTGAATGCGGCCGGATTTCCAGGACTGGAGATTGTCGTGGCCGAGACGGGGTGGCCGTCCCGCGGGGATCCGGGCGAGGCCGGAACCACGATTGAGAACGCTAGGGCTTTCAACGGAAACCTAATCGCCCATCTAAGATCCTCGGCCGGGACGCCGATGATGCCCGGAAAGCCCGTCGAGACCTACATTTTCGCGCTGTTTGACGAGGACCTGAAGCCTGGGCCGGCCTCCGAGAGAGCCTTCGGACTGTTCCGGCCGGATCTGACGATGACGTATGATGCCGGAGTGATAGGTAGGCCGTCGGTGACGGAGAAGACGGGGGGGTGGTGCGTGCCGAAGGAGGGGGCGACGGAGGAGGAGCTGCAGGAGAATCTGGACTACGCGTGCGGGCAGGAAGGGGTCGACTGCGGTCCGATTCAGCCGGGCGGGGTTTGCTTTGAGCCGGATACGGTTCGATCGCACGCGGCTTATGCTATGAACCAGCTGTTCCAGATCACAGGGAGGAATGCCTGGAACTGCGATTTCCGCCAGTCGGCGATGCTCACGGCCCAGAACCCGAGTTACAATGGGTGCGTGTATTCCGGAAGTGGAAGCTAAAGCCTGTGTGGCTTGTAATTCAAACTCTCTCTCTCTTTGTCTGTATATATATATATATATATAT

Network for GWHGAAEX000542

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00332.17	Glyco_hydro_17	29	344	1.10E-81
PF07983.12	X8	360	431	1.10E-20

Protein Sequence

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH17
Carbohydrate-Active enzymes Family	GH17

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	18.010
SRP064423	SRR2545915	Juvenile tuber	34.540
SRP108465	SRR5643513	five period of Gastrodia elata	59.180
	SRR5643514	five period of Gastrodia elata	42.880
	SRR5643515	five period of Gastrodia elata	82.150
	SRR5643524	five period of Gastrodia elata	65.430
	SRR5643525	five period of Gastrodia elata	53.470
	SRR5643528	five period of Gastrodia elata	54.270
	SRR5643658	five period of Gastrodia elata	66.520
	SRR5643659	five period of Gastrodia elata	60.230
	SRR5643660	five period of Gastrodia elata	39.750
	SRR5643661	five period of Gastrodia elata	80.660
	SRR5643662	five period of Gastrodia elata	65.090
	SRR5643663	five period of Gastrodia elata	71.810
	SRR5643664	five period of Gastrodia elata	55.570
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	57.940
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	68.480
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	66.910
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	62.890
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	61.070
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	52.460
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	77.760
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	71.090
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	80.850
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	62.860
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	53.660
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	53.660
SRP279888	Gastro	Gastrodia elata tuber	80.18
	Juven	Juvenile tuber	54.33
	Mother_Gastro	Mother tuber of Gastrodia elata	178.21
	Mother_Juven	Mother tuber of Juvenile	124.31