Detail information of GWHGAAEX000546/evm.TU.scaffold_1.283


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|434406743|ref|YP_007149628.1|4.00E-82diaminohydroxyphosphoribosylaminopyrimidine deaminase [Cylindrospermum stagnale PCC 7417]
KOGKOG10184.00E-132Cytosine deaminase FCY1 and related enzymes
nrgi|743856885|ref|XP_010941978.1|5.88E-168PREDICTED: riboflavin biosynthesis protein PYRD, chloroplastic [Elaeis guineensis]
Swissprottr|B6TRH4|RIBD_MAIZE2.00E-143Inactive 5-amino-6-(5-phosphoribosylamino)uracil reductase (Precursor)
trEMBLtr|M0STY1|M0STY1_MUSAM2.00E-160Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P32190_001}
TAIRAT4G209604.00E-132Cytidine/deoxycytidylate deaminase family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000081200732912029993+
Transcript Sequence

Network for GWHGAAEX000546

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00383.22dCMP_cyt_deam_1791741.70E-20
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11752ribD Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Riboflavin metabolismmap00740
Quorum sensingmap02024

Gene Ontology

GO term OntologyName
GO:0055114Biological Processoxidation-reduction process
GO:0009231Biological Processriboflavin biosynthetic process
GO:0016787Molecular Functionhydrolase activity
GO:0008270Molecular Functionzinc ion binding
GO:0008835Molecular Functiondiaminohydroxyphosphoribosylaminopyrimidine deaminase activity
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms16.390
SRR2545915Juvenile tuber13.530
SRP108465SRR5643513five period of Gastrodia elata6.070
SRR5643514five period of Gastrodia elata5.870
SRR5643515five period of Gastrodia elata5.610
SRR5643524five period of Gastrodia elata6.750
SRR5643525five period of Gastrodia elata9.050
SRR5643528five period of Gastrodia elata6.990
SRR5643658five period of Gastrodia elata8.030
SRR5643659five period of Gastrodia elata6.280
SRR5643660five period of Gastrodia elata6.730
SRR5643661five period of Gastrodia elata6.880
SRR5643662five period of Gastrodia elata7.830
SRR5643663five period of Gastrodia elata7.240
SRR5643664five period of Gastrodia elata6.970
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_17.800
SRR6049655Rhizomagastrodiae_C368-T10_good_13.480
SRR6049656Rhizomagastrodiae_C368-T07_good_17.020
SRR6049657Rhizomagastrodiae_C368-T07_good_18.530
SRR6049658Rhizomagastrodiae_C368-T04_good_110.580
SRR6049659Rhizomagastrodiae_C368-T04_good_110.990
SRR6049660Rhizomagastrodiae_C368-T01_good_18.040
SRR6049661Rhizomagastrodiae_C368-T04_good_18.300
SRR6049662Rhizomagastrodiae_C368-T01_good_17.630
SRR6049663Rhizomagastrodiae_C368-T01_good_18.300
SRR6049664Rhizomagastrodiae_C368-T10_good_15.920
SRR6049665Rhizomagastrodiae_C368-T10_good_15.920
SRP279888GastroGastrodia elata tuber 12.45
JuvenJuvenile tuber11.03
Mother_GastroMother tuber of Gastrodia elata 10.33
Mother_JuvenMother tuber of Juvenile 9.71