Detail information of GWHGAAEX000549/evm.TU.scaffold_1.286
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 4.00E-51 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|743761635|ref|XP_010943241.1| | 0 | PREDICTED: receptor-like protein kinase HSL1 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q9SGP2|HSL1_ARATH | 0 | Receptor-like protein kinase HSL1 (Precursor) |
| trEMBL | tr|C5YSZ0|C5YSZ0_SORBI | 0 | Putative uncharacterized protein Sb08g022790 {ECO:0000313|EMBL:EES16440.1} |
| TAIR | AT5G49660 | 0 | Leucine-rich repeat transmembrane protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000008 | 12058340 | 12063844 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000549
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00069.24 | Pkinase | 649 | 924 | 2.50E-48 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-XI-1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.510 |
| SRR2545915 | Juvenile tuber | 2.740 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.960 |
| SRR5643514 | five period of Gastrodia elata | 3.030 | |
| SRR5643515 | five period of Gastrodia elata | 2.250 | |
| SRR5643524 | five period of Gastrodia elata | 2.920 | |
| SRR5643525 | five period of Gastrodia elata | 15.870 | |
| SRR5643528 | five period of Gastrodia elata | 10.740 | |
| SRR5643658 | five period of Gastrodia elata | 14.920 | |
| SRR5643659 | five period of Gastrodia elata | 3.270 | |
| SRR5643660 | five period of Gastrodia elata | 3.320 | |
| SRR5643661 | five period of Gastrodia elata | 4.260 | |
| SRR5643662 | five period of Gastrodia elata | 3.800 | |
| SRR5643663 | five period of Gastrodia elata | 5.380 | |
| SRR5643664 | five period of Gastrodia elata | 3.270 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.810 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.720 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.820 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.780 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.320 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.160 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.480 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.290 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.200 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.930 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.080 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.080 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.65 |
| Juven | Juvenile tuber | 5.86 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.36 | |
| Mother_Juven | Mother tuber of Juvenile | 7.59 |