Detail information of GWHGAAEX000551/evm.TU.scaffold_1.287
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 1.00E-47 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|743761633|ref|XP_010943231.1| | 0 | PREDICTED: receptor-like protein kinase HAIKU2 [Elaeis guineensis] |
| Swissprot | tr|Q9LJM4|IKU2_ARATH | 0 | Receptor-like protein kinase HAIKU2 (Precursor) |
| trEMBL | tr|W9SDE2|W9SDE2_9ROSA | 0 | Receptor-like protein kinase HAIKU2 {ECO:0000313|EMBL:EXC01146.1} |
| TAIR | AT1G09970 | 0 | Leucine-rich receptor-like protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000008 | 12070258 | 12074873 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000551
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 20 | 61 | 3.00E-07 |
| PF13855.5 | LRR_8 | 90 | 148 | 1.30E-06 |
| PF13855.5 | LRR_8 | 499 | 557 | 8.40E-07 |
| PF00069.24 | Pkinase | 664 | 889 | 1.70E-37 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-XI-1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005515 | Molecular Function | protein binding |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 12.100 |
| SRR2545915 | Juvenile tuber | 16.430 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 16.120 |
| SRR5643514 | five period of Gastrodia elata | 13.490 | |
| SRR5643515 | five period of Gastrodia elata | 27.200 | |
| SRR5643524 | five period of Gastrodia elata | 18.600 | |
| SRR5643525 | five period of Gastrodia elata | 38.340 | |
| SRR5643528 | five period of Gastrodia elata | 57.820 | |
| SRR5643658 | five period of Gastrodia elata | 47.900 | |
| SRR5643659 | five period of Gastrodia elata | 17.000 | |
| SRR5643660 | five period of Gastrodia elata | 13.790 | |
| SRR5643661 | five period of Gastrodia elata | 18.020 | |
| SRR5643662 | five period of Gastrodia elata | 20.150 | |
| SRR5643663 | five period of Gastrodia elata | 17.250 | |
| SRR5643664 | five period of Gastrodia elata | 11.620 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.660 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.350 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.000 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.890 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.800 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 5.940 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.230 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.550 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 10.050 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 15.610 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.290 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.290 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.04 |
| Juven | Juvenile tuber | 21.59 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 84.08 | |
| Mother_Juven | Mother tuber of Juvenile | 88.21 |