Gene detail

Detail information of GWHGAAEX000554/evm.TU.scaffold_1.290

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1134	7.00E-88	Uncharacterized conserved protein
nr	gi\|743761687\|ref\|XP_010943525.1\|	9.73E-126	PREDICTED: CSC1-like protein RXW8 isoform X2 [Elaeis guineensis]
Swissprot	tr\|F4IBD7\|CSCLA_ARATH	3.00E-96	CSC1-like protein RXW8
trEMBL	tr\|M0STY7\|M0STY7_MUSAM	2.00E-120	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P32250_001}
TAIR	AT1G10090	7.00E-88	Early-responsive to dehydration stress protein (ERD4)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000008	12148255	12166841	-

Transcript Sequence
>GWHTAAEX000554 TTATGAGGCGGTTCGCTCCATCTCCACGCTCCCAGCATGCAAAGCAACCCTGCACTTCACTCCATCCACTTTCCCCTCCCTCCCCGCCTTTCCTTCCTTCTCTGATATCTCCTTGCATCTCCATTCATCTTGCAGATATTAGGTTTTTCTATGCTGACTAGAGTGGATCGAGTTTTCACTTCCAGTGATCAGTGCGTTCTGTTAATTTAAGGGAAGAGGTTTTCGATTCTTTGAAGGGATGAATCTCGCGGCATTAGTGACGTCGGCGGGGATTAACATAGGCATTTGCACGCTTCTGCTGCTTCTCTATTCGATTTTGAGGAATCAGCCTGGTAATGCCGGCGTTTATTTCGGGCGGAGGCTCGCCGAAGAGCGGAGTCGGCGACAGGATTTGTCTAGTCTGAAAAGGCTGATACCCTCTCCGAGTTGGATCGTTAAAGCATGGGAGTCTTCGGAGGACGACATTCTTGCTACTGCCGGATTGGATGCGGCGGTTTTTATCAGAATAATTGTTTTCAGCATGCGTATCTTCTCCATTGCCACGGCGGTTTGCGTGCTTGGTGTGTTACCCTCAAACTATTTTGGGCGAGAGATGCAAAACACTAATTTTCACTCTCAATCATTAGAAATTTTCACCATTGGAAATGTGAAGAAAGGATCTAAATGGCTTTGGGTTCACTGTATTTCATTATACATAATTTCCTTCTCAGCTTGCACCCTTCTTTACTTTGAATATAAAAGTATTGCAAGACTCAGATTCCTTCATATTAGTCAATTGTCATCTAATCCTCGCCTTTTTGCGGTTCTTGTTCGAGCCATTCCAAAATCTGATGGAGAAACAATCAGCGATTCTGTCAAAAATTTCTTCACCAAATATCATGCAGCCAGTTATTTATCACATCAGCTAATTTTTAGAGTTGGTAAAGTTCACAGAATGATGGATAATGCAGAGAAGGCTTACAAACAGTTGGCAAACTTGAAGGGTGCTTCTTTTGACAAAAATTACCAACCTTTCAGCTATAAATGTGGACTTTGTGGAGGAATTCCCCCATCCAAATTGAATGTCAACACATTTGAGCTTGGTGGAGAGGAAACTGATCGTAGCCAATTGTGTTCGCTCAAACCTGACAAGGAATGCGCTGCTGCTTTTGTGTTTTTCAGAACCCGCTATGCAGCGCTAGTGGCCTCACAGGATCGCCACGCTGGCCGCCACCGTCGTTCTCATGTTTCTGTTCCTCATTCCCATCACCTTCGTGCAAGGCTTGTCCCAGCTGGATCAGCTGCGGATGACATTCCCATTTTTGAACGGCCTGTGGAAGAAGGAATTGGTGACGCAAATAGTGACGGGGTACCTTCCCAGCGTCATTCTGCAGTTGTTCCTGTACACAGTGCCGCCGATGATGCTGCTGTTTTCGGCGGTGGAAGGATCGACTTGTCACAGCGAGAGGAAGAAGAGCGCGTGCTGCAAGGTGCTGTGCTTCTCCATCTGGAACGTGTTCTTCGTCAACGTGCTGTCCGGATCCGCCATCAGCCAGCTGCACGCCATATCCAGCCCCAAGGACATTCCCTCCCAGCTCGCCAAAGCCGTGCCGAGGCAGGCCACATTCTTTATCACTTACGTGCTGACGTCGGGGTGGGCGGGCTTATCCTGGGAGGCGGTGCAGATCTTCCGGCTGATATGGAACTTGATGAGGCGGAAGGACGATCCGGAATCCGTCCGATCGTTTCCTTACCACACCGAAATCCCCAAAGTAATGCTGATCGGGTTGCTAGGCTTAAGCTGCTCCATACAGGCGCCGCTCATCGCCCCTTTCGCGCTGCTGTATTTCCTCCTGGCCTTCGTCGTTTACCGAAATCAGATGCTGAACGTGTACTGCTCGAAGAACGAGAGCGGGGGAGGGATGTGGCCGGTGATGCACAACGCGAGCATCTTCTCGTTGGTTCTGAGTCAGATCGGAGCGCTGGGAGTGTTCGGGACGAAGGACTCTCCGTTCGCGTTCGGCTTCACCATTCCGCTTCTGATCTGCACACTCCTCTTCAACGAGTACTGCAGGCAGCGATTCCGCCCGCTCTTCGACCGCCTCTCCGCGCAGGAGATCATCGATATGGATGCCGAAGATCAGCGGCGCGGGAGGATGGATCGACTGCGCCCAGTCATCCAATTCGCTTACCGCCAGATCCCGCCTCAGCCCGCTTCTTCTTCGTCCTCAATGGATGTGAAAAGGCCCGCTGCTCCGGCGGGACTGCAGAGGGCTGTCAGATCTGTAGCCAGGCTCTTCAGACCGCAGCCTTAAATAGATGA

Network for GWHGAAEX000554

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13967.5	RSN1_TM	5	165	8.30E-39
PF14703.5	PHM7_cyt	187	344	2.70E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.120
SRP064423	SRR2545915	Juvenile tuber	0.590
SRP108465	SRR5643513	five period of Gastrodia elata	2.120
	SRR5643514	five period of Gastrodia elata	2.360
	SRR5643515	five period of Gastrodia elata	1.850
	SRR5643524	five period of Gastrodia elata	2.550
	SRR5643525	five period of Gastrodia elata	5.370
	SRR5643528	five period of Gastrodia elata	4.140
	SRR5643658	five period of Gastrodia elata	6.000
	SRR5643659	five period of Gastrodia elata	1.520
	SRR5643660	five period of Gastrodia elata	2.310
	SRR5643661	five period of Gastrodia elata	3.120
	SRR5643662	five period of Gastrodia elata	3.020
	SRR5643663	five period of Gastrodia elata	2.870
	SRR5643664	five period of Gastrodia elata	2.730
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.250
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.690
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.460
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.890
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.830
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.760
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.450
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.950
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.010
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.190
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.850
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.850
SRP279888	Gastro	Gastrodia elata tuber	2.05
	Juven	Juvenile tuber	2.54
	Mother_Gastro	Mother tuber of Gastrodia elata	7.08
	Mother_Juven	Mother tuber of Juvenile	4.73