Gene detail

Detail information of GWHGAAEX000555/evm.TU.scaffold_1.291

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1623	8.00E-52	Multitransmembrane protein
nr	gi\|695047565\|ref\|XP_009411666.1\|	2.14E-84	PREDICTED: bidirectional sugar transporter SWEET16-like isoform X1 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q84WN3\|SWT17_ARATH	8.00E-64	Bidirectional sugar transporter SWEET17
trEMBL	tr\|M0TP79\|M0TP79_MUSAM	4.00E-81	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P10260_001}
TAIR	AT5G13170	8.00E-52	senescence-associated gene 29

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000008	12189304	12192349	+

Transcript Sequence
>GWHTAAEX000555 ACAGACTCAGCTACACCTGAAGCACAAACGTGTAAAACAAGCTGGGACGGCAAGCTAACGCTGCTCCGGTCCAGGAAGCCCTACCCATTATTAACCAATCAATCTGCTCCCGTTTGCTCGACCTCCTGCTTCCTTCCGAGAGAAAAACAAAAGGAGATCGGAAAAAAAGGCTGAAGTGATGGAGAAATGGCTCCTTAACGTAGGAGTGATAGGCAATTTGGTATCAGTTCTCCTCTATGGCTCTCCCATGCCAACGATTTGGAGGATTGTGAGGAAAGGGGAGACGGAGGAGTTCGATGCGCTGCCGTACATCGCGTCTCTGCTGGGGGCATCGCTGTGGGCTTATTACGGGGTGCTGAAGCCGGACGGACTTCCTCTTGCCACCATTAATGGCATCGGCGCTCTGTTTGAGGCCGCCTACATATCCATCTACATCTATTTTGCCGCCCCTTCGCGTCGGGTGAAGGCTGGTATTTTGGTAATTATTTTAAACGTTGGGTTTGGCGGGGCGATGGCGAGCGTGGCTCGCTTCGCTGTGAAGGAGGATCTGAGGCTTACGTTTCTCGGAGTTGTATGCGCCTGCCTCAGTTTGTTAATGTACGGCTCCCCGCTGGCTGTCATGAAATTTGTGATAAGAACAAAAAGTGTAGAGTACATGCCATTCTACCTCTCTTTGTTTCTTACTCTGAATGGTGGAATTTGGACACTCTATTCTATATTGGACAGAGATTTCTTTCTGGGTATAGCCAATGGAATTGGATTCATTTTGGGTAGCCTTCAACTCATACTATACATACTTTACATGAATCCAAAAGAGCCCAAACATTTATATGTTGCTATTGAAGAAAGCCCACAACAGCAATCAGCAGCTGATTATTCCATGCACATAAACTCATAGTGAAGAGGAAGTAGGACATGAGCCCCATATAAAATCATAATTATTTATATGCAAAGACTGTTGCCCTCTTTTTTAATAGATGAAAATTGTATTTCTAGTAAAAATAAGAATGTCAAGGGATTGATTTTGTGTGCTCAATTTAAAAGAAAATAAATTGCGATTAGTACAATGAAGATGTATAAGTAAAAAAGAATACTAGCGTCCATGGTGTAAATTTCATCGATTTGCTTTAGAGTTTAGTGCATTTTCTTGCTTCACTGCCTTTTCTAGAATTGCTCCCAACACATCTTGAACTACTTTATAGAAGCATGAAATTAGATTCAATAATCACAGCCACAGTTGTCCTGTTTGGCAGTGCAATAGAAGCCATCAAACCCACCACAAATATGAAGCTCCCTTCTCACATTTTGCGATTGGACCACCGCTGCAGCTTCAAGCTGCTTAGATGGCCCTTCAGAAATCACCATATCTAATTTGCTAGTGTTGACATCGTTAGGATAATAACCTATCATAAATAGTATTATAGCTTAATGGTTAGACCCCTTGAATTTATGCTCAAGATTTTAACTGTAATATCCTTTTAGAAAAAAGTTGATGCTAAAGATGGGCTTAGACAAAGCAGCATGCTTTATGTTTCTTTCTCCTTAACAAATTTTTATGCAGTGTGAAAAGCAAACGCAGAACAACAGGCGGTCCCTCAAGTGGAAGAAAGAGACGTCAGTTACGCTATGAAGAATAAATTTTGGAAAGGAAGAAACATAATAGCTAAGAGGTACTGTTCGAGGCATTGCAGCAATCGAATTCTTGCTCACGATCTTGATGGCGTTTGCATTGTCACCTTCAGAGGATATTATACCGTCAAGCTCATATATCTACGGGAGAAGAACATTGCCGAAGATATAAAGCTTGGACCTTTGCAACTGAACACCATGAGTCTGCTATTTTAAGGAGATCAATCATGTAACAATAATTGTCCCTAAAGTGATAGTGATCCTTGGGCCAAAAATGATCAAAATGTTTCATTTGTCAACACAGGAGAAAACTCCCAATACCCAACATGTAAACTCAGATGTTTACAAATTATCAAAGTGTTTCTTTTCCATTTTTTATCTATTTTTAATATTATG

Network for GWHGAAEX000555

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03083.15	MtN3_slv	8	90	5.00E-23
PF03083.15	MtN3_slv	128	212	4.10E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.640
SRP064423	SRR2545915	Juvenile tuber	7.610
SRP108465	SRR5643513	five period of Gastrodia elata	56.320
	SRR5643514	five period of Gastrodia elata	24.570
	SRR5643515	five period of Gastrodia elata	51.940
	SRR5643524	five period of Gastrodia elata	45.270
	SRR5643525	five period of Gastrodia elata	6.110
	SRR5643528	five period of Gastrodia elata	0.820
	SRR5643658	five period of Gastrodia elata	0.970
	SRR5643659	five period of Gastrodia elata	18.070
	SRR5643660	five period of Gastrodia elata	14.700
	SRR5643661	five period of Gastrodia elata	24.540
	SRR5643662	five period of Gastrodia elata	8.530
	SRR5643663	five period of Gastrodia elata	10.590
	SRR5643664	five period of Gastrodia elata	4.590
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	23.090
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	40.030
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	29.270
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	21.250
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	22.740
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	19.690
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	23.710
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	24.440
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	19.010
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	23.550
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	33.180
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	33.180
SRP279888	Gastro	Gastrodia elata tuber	3.45
	Juven	Juvenile tuber	20.59
	Mother_Gastro	Mother tuber of Gastrodia elata	42.20
	Mother_Juven	Mother tuber of Juvenile	34.81