Detail information of GWHGAAEX000556/evm.TU.scaffold_1.292
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0836 | 2.00E-120 | F-actin capping protein, alpha subunit |
| nr | gi|743785112|ref|XP_010921826.1| | 1.36E-131 | PREDICTED: F-actin-capping protein subunit alpha [Elaeis guineensis] |
| Swissprot | tr|O82631|CAPZA_ARATH | 4.00E-121 | F-actin-capping protein subunit alpha |
| trEMBL | tr|M0RRF3|M0RRF3_MUSAM | 2.00E-129 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P11730_001} |
| TAIR | AT3G05520 | 2.00E-120 | Subunits of heterodimeric actin filament capping protein Capz superfamily |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000008 | 12193210 | 12205410 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000556
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01267.16 | F-actin_cap_A | 2 | 229 | 1.80E-60 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10364 | CAPZA | Endocytosis | map04144 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0051016 | Biological Process | barbed-end actin filament capping |
| GO:0008290 | Cellular Component | F-actin capping protein complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 22.380 |
| SRR2545915 | Juvenile tuber | 37.440 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.690 |
| SRR5643514 | five period of Gastrodia elata | 6.760 | |
| SRR5643515 | five period of Gastrodia elata | 6.630 | |
| SRR5643524 | five period of Gastrodia elata | 5.380 | |
| SRR5643525 | five period of Gastrodia elata | 5.970 | |
| SRR5643528 | five period of Gastrodia elata | 6.070 | |
| SRR5643658 | five period of Gastrodia elata | 6.210 | |
| SRR5643659 | five period of Gastrodia elata | 6.820 | |
| SRR5643660 | five period of Gastrodia elata | 5.830 | |
| SRR5643661 | five period of Gastrodia elata | 4.370 | |
| SRR5643662 | five period of Gastrodia elata | 7.670 | |
| SRR5643663 | five period of Gastrodia elata | 7.170 | |
| SRR5643664 | five period of Gastrodia elata | 3.770 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.080 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.430 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 17.580 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 11.210 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.300 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.450 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.200 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.030 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.800 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.820 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.820 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 28.84 |
| Juven | Juvenile tuber | 9.82 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 23.44 | |
| Mother_Juven | Mother tuber of Juvenile | 9.03 |