Detail information of GWHGAAEX000560/evm.TU.scaffold_1.296


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG25022.00E-170Tub family proteins
nrgi|743784720|ref|XP_010921732.1|0PREDICTED: tubby-like F-box protein 3 isoform X1 [Elaeis guineensis]
Swissprottr|Q10LG8|TLP6_ORYSJ0Tubby-like F-box protein 6
trEMBLtr|M0SFG0|M0SFG0_MUSAM0Tubby-like F-box protein {ECO:0000256|RuleBase:RU361125}
TAIRAT2G479002.00E-170tubby like protein 3

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000081227498312293563-
Transcript Sequence

Network for GWHGAAEX000560

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.32F-box46945.70E-09
PF01167.17Tub1103882.10E-91
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyTUB
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms34.280
SRR2545915Juvenile tuber26.060
SRP108465SRR5643513five period of Gastrodia elata27.160
SRR5643514five period of Gastrodia elata19.980
SRR5643515five period of Gastrodia elata29.740
SRR5643524five period of Gastrodia elata26.760
SRR5643525five period of Gastrodia elata22.270
SRR5643528five period of Gastrodia elata37.810
SRR5643658five period of Gastrodia elata17.040
SRR5643659five period of Gastrodia elata21.670
SRR5643660five period of Gastrodia elata20.900
SRR5643661five period of Gastrodia elata20.720
SRR5643662five period of Gastrodia elata19.950
SRR5643663five period of Gastrodia elata21.210
SRR5643664five period of Gastrodia elata18.240
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_125.400
SRR6049655Rhizomagastrodiae_C368-T10_good_122.540
SRR6049656Rhizomagastrodiae_C368-T07_good_124.820
SRR6049657Rhizomagastrodiae_C368-T07_good_124.450
SRR6049658Rhizomagastrodiae_C368-T04_good_122.740
SRR6049659Rhizomagastrodiae_C368-T04_good_128.580
SRR6049660Rhizomagastrodiae_C368-T01_good_120.860
SRR6049661Rhizomagastrodiae_C368-T04_good_123.380
SRR6049662Rhizomagastrodiae_C368-T01_good_120.730
SRR6049663Rhizomagastrodiae_C368-T01_good_122.500
SRR6049664Rhizomagastrodiae_C368-T10_good_125.480
SRR6049665Rhizomagastrodiae_C368-T10_good_125.480
SRP279888GastroGastrodia elata tuber 20.08
JuvenJuvenile tuber26.33
Mother_GastroMother tuber of Gastrodia elata 56.88
Mother_JuvenMother tuber of Juvenile 73.83