Detail information of GWHGAAEX000561/evm.TU.scaffold_1.297
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|427735603|ref|YP_007055147.1| | 2.00E-21 | Na+ antiporter [Rivularia sp. PCC 7116] |
| KOG | KOG1965 | 0 | Sodium/hydrogen exchanger protein |
| nr | gi|743784716|ref|XP_010921731.1| | 0 | PREDICTED: sodium/hydrogen exchanger 2-like [Elaeis guineensis] |
| Swissprot | tr|Q56XP4|NHX2_ARATH | 0 | Sodium/hydrogen exchanger 2 |
| trEMBL | tr|D2Y391|D2Y391_9POAL | 0 | Sodium/hydrogen exchanger {ECO:0000256|RuleBase:RU003722} |
| TAIR | AT3G05030 | 0 | sodium hydrogen exchanger 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000008 | 12295267 | 12353699 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000561
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00999.20 | Na_H_Exchanger | 24 | 384 | 3.40E-56 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006812 | Biological Process | cation transport |
| GO:0006814 | Biological Process | sodium ion transport |
| GO:0006885 | Biological Process | regulation of pH |
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0015385 | Molecular Function | sodium:proton antiporter activity |
| GO:0015299 | Molecular Function | solute:proton antiporter activity |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 78.920 |
| SRR2545915 | Juvenile tuber | 90.360 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 50.330 |
| SRR5643514 | five period of Gastrodia elata | 60.490 | |
| SRR5643515 | five period of Gastrodia elata | 55.350 | |
| SRR5643524 | five period of Gastrodia elata | 60.440 | |
| SRR5643525 | five period of Gastrodia elata | 66.180 | |
| SRR5643528 | five period of Gastrodia elata | 59.820 | |
| SRR5643658 | five period of Gastrodia elata | 66.730 | |
| SRR5643659 | five period of Gastrodia elata | 61.700 | |
| SRR5643660 | five period of Gastrodia elata | 61.860 | |
| SRR5643661 | five period of Gastrodia elata | 65.230 | |
| SRR5643662 | five period of Gastrodia elata | 58.610 | |
| SRR5643663 | five period of Gastrodia elata | 68.880 | |
| SRR5643664 | five period of Gastrodia elata | 52.330 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 67.880 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 75.990 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 72.230 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 74.570 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 81.810 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 81.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 74.460 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 75.540 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 71.550 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 76.580 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 66.360 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 66.360 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 54.40 |
| Juven | Juvenile tuber | 86.25 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 83.60 | |
| Mother_Juven | Mother tuber of Juvenile | 70.86 |