Gene detail

Detail information of GWHGAAEX000567/evm.TU.scaffold_1.304

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|695009946\|ref\|XP_009391626.1\|	2.00E-46	PREDICTED: uncharacterized protein LOC103977751 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9M3G7\|ATM_ARATH	2.00E-06	Serine/threonine-protein kinase ATM
trEMBL	tr\|W9QN19\|W9QN19_9ROSA	2.00E-21	Uncharacterized protein {ECO:0000313\|EMBL:EXB44296.1}
trEMBL	tr\|W9QN19\|W9QN19_9ROSA	2.00E-18	Uncharacterized protein {ECO:0000313\|EMBL:EXB44296.1}
trEMBL	tr\|W9QN19\|W9QN19_9ROSA	1.00E-06	Uncharacterized protein {ECO:0000313\|EMBL:EXB44296.1}
trEMBL	tr\|W9QN19\|W9QN19_9ROSA	1.00E-06	Uncharacterized protein {ECO:0000313\|EMBL:EXB44296.1}
TAIR	AT1G48560	3.00E-10	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000008	12582638	12592908	+

Transcript Sequence
>GWHTAAEX000567 AGTGCACCCAAAGGCATAGTGGTGTATGAATGTTACATTTTGATCTTAGCACTTGTTAGGGTTTATTGACACTGCCATGATTATGGAGGGGGAAGAAGGATTAACGTTATTCAGACTATTCAAGAACCTCCCTCGCCGCGTTTCTACTTTTTCACTTGCCAACCACCCTTCCGCAGCGACGCGCCGCCATTTCAAAGCATGGAAGACCGTCAAGAAGAACCAAGTAGCTCAAGAAATGAAGGTCTGTCGCATCCGAAGTTCAGCAAAAGTGGGAGACCTCGTTTGGGTAATGGCGTTCCCTTCCACCTGGTGGCCCGGCCGCATCAAGCGCTTCAATGGGCGCTTTGTCTCGGTATCGTTTTTCGGCTGCAACAAAACCCACTTGTTCAAGCCTTCAGAAATCCTTCGTTTCGAAGAAGCTTATCCTCGACTGGTAAAAATGCTCGGAATAAAACTATCGTATGAGATTGGTCTTGCAATGGATGAGTTGTCGAGGAGCACAGCGATTGGTTTGAAGTGTTCTTGTTCTGTTTCTTCTGTGGATGAAGATAAATCTATCGCAGTGAAGAGGGCTTTTAATCCACGAGAGATCCTTGACTTTGTAATCGGTAAGGCCACTTTACCACAAGTTGGGAGCGGGGAGATTGCGACTGCAGTTAGGGTATCAGCTGCTTTAAATTCTTTTCGGTATGATTCGGTGGTCTGTAAGACCAGTGAAGTGGATGAAGGGTTTTGTGCAGAAGGTGTTTTGGATTTTGTTCGTGATATGGCTGTTAAACCGTGTGTTGATGAGAAGGCAGTGGAACAGTTGCTTTCCTTTCGACGGTTTACTTCGGTAAAACCTAATTGGTTTTATCAGCAAGATTGGGAACTTGATGAGGATAGTTTTGAGAGTCTCGAGCTTGAAGATATGATGGGGGAAGATGGCTTGGAGAGTAGTAGGATTGTAGATTGTTCATACGATGATCAATTTTATCATGATGCTAAAACATGGGTTCCGGAGGTTGATGTATTGGTCAAACCACTAGTAGATAACAAGGGAGGAGACACATGTCCTGATAATCTGGAAGACTCCACTTTTTTTGATAAAGTTGATACCGATGCTCAACGCAGCCAAAATTTCTTCTTTCCAAACGATGCAAAAGATACTGCAGTTGATGTTATTCACATGCCTGTAAATAGCAATGTTCAAGAGATCTGTGTTATCAACTCAATAGACTTGAGCATATTCGATATGGATGACAGGTATGACTCTCCGCTTTGTGATGCTGATGACGATCTGTTTGCAGGTATCCATTCATCTTGCTGTACAGAAGTGGCTGATGCCAAAGCTCAATCCCACCGGAAATCTTCACTTGAGAATGATTCAAATGAACCTGAGAATGCCAGTTTGGTCACATCATTGCCTCAAAATGACCCTAGTTCTGCATTTAGTAGTAGCAGATCTAAAGTATCAACAAACTTAAGACATACTGCACTGAATGAAAGCTCTGCTGTACCTGCAAGCAGCTATTCATCTTTCTGTATAGAAGTGGTTGATGCTGAAGCTACATCGCATAGGGAATCTTCGCTTGGGAATGATTTAAATGAAGCTGAGAATGCTAATTTTGTTATATCATTGCCTCAAAATGACAGTTCTGCATTTAGAAGTAGCAGATCTAAAGTGCTAACACACTTAGAACATACAGCACTGAATGAACGCTCTGCTATACCCGTAGCCAATTATTCATCTTGCTGTACAGAAATGGCTGGTGTCGAAGCTCAATCCCACCGAAAATCTCCACTTGCGAATGATTCAACTAAAGCAGAGAATGCCAATTTGGTTATATCATTGGTTCAAAATGGCCCCAATTTTGCATTTAGTAGCAGATCTATAGTGCCAACAAATTTAGAACACACATCACAGAATACAAGCTCTGCTATACCAGCAGGCAGCCATTCATCTCTCTATACAGAAGTAGCTGATTCTGAATCTCAATGCCATAGGAAATCTTCACTTGCGAATGATTCAAATGGAGCAGAGAATGCCGATTTAATTATTTCATGGCGTCCAAATGACTCCAATTCTGTATTGGGTATAGTGCCAACAAACTTAGAACATACGGCACAAAATGAATGCTCTGCTATACCCGTTATCAGTGAAATTCAGCCACTAAGGGCAGTGCCTTTGTCAGGGGGGCGATTATACAGCCTCCCCATCAATAAATGCACCATATTTTCTCCCATCAAAGCCATAAATGTTGCTTCCAAGCCCTTGCCAGGACCTGAGATCCCTGAGATGACTCCTTTTGCAGTAACGACGCCGCCTATTTCATCCAACAAAAGAAAACATTATGAACTGGCAACTTTCAGAACTTACAAATCACACCCAACACCAGTTTTAGCTGCAAAAGAAAAAAACTCGCATGGTGCCTCCCAGTGGAAGGCTTACTATTCTTCGCCCTTGACGGATGTTGAACCCCACCCAGCCAAAAGCTCGCCCGTCCTATTGAATATGAAGTTTCCAAAGGATTATCCTCTGCCATCCAAGGAGGAGCTTGAGAAGAAGTTTGGTGCTTTTGGACCATTGGATCGCACTAGAACCAAGGTTTTCTTCTACACAGGAGTCGGCCAGGTTGTTTTCCTTCACAGCGCCGATGCGGTCACCGTTTCCAGCCTCGTGACAAAGAAGAGGGTATTTGGCCAAGCCAACGTCCGCTTCTGGTTCTATAATATCCCGCCATTTGCCGTCGATACGATGAAGCCGTTAACCTCACCCACGTTGATCCACATGAAATTTCCGAAGGACTGTTCTCTGCCTTCGAAAGAGGAACTCGAGAAGAAGTTTGGCGTTTTCGGGCCATTGAATTGTTCGAGAACGGCAGTCTTCCTGGACGTGCGCTGTGGGCGGGTGGTTTTCCTGCACAGTGCCGACGCAGCCGTGGCTTACGACTATGCGGCCAAGGGAAGAATGTTTGGTCAAGCTGGTGTGCGATTTTGGTTCTCTAAAAATGATGTTAGTATTAATAAAAGTAATAAATCTTGGCATAATCCCAAATCATGCCTTAAAAAATCCTGGTTGACTCGGCAGACTGATAAAAGGGAAAATTGCAGCGTGAGATTTTCTTTGTGATGATGAAAAGGATGAACGGTTTGTATTTCTTACATTAGGAAAAAAATGTAGAACTGAAATTCTTCTGACTCGTTGGTTCGGAGATGGGATCGAGTATTTTGTTTTTTGGGGATAAATGCTTATTTTTTAGATGACGATATTTGCTAGGGCTTGGCTCTTTTTTTTGTCTCGTTATGAGCTTGTGCTTTAGATTGAAATTATTGATATGAAAAGATACCGCTCTATGCTGATATCTTGAGAAGTATCAGACATTTTTTGTTATTTCTCTGTCAAGTTTTTGTTTTGTCTACTTAGTTGTTCACAAAGTTTGGTTCTTAATGAATTGACTTTGACAGTCTTTTCTGCTTTAAATAATGAGAAATGCTAGCTGTCCTTTAAAGTGCACCAT

Network for GWHGAAEX000567

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX000567
MIMEGEEGLTLFRLFKNLPRRVSTFSLANHPSAATRRHFKAWKTVKKNQVAQEMKVCRIRSSAKVGDLVWVMAFPSTWWPGRIKRFNGRFVSVSFFGCNKTHLFKPSEILRFEEAYPRLVKMLGIKLSYEIGLAMDELSRSTAIGLKCSCSVSSVDEDKSIAVKRAFNPREILDFVIGKATLPQVGSGEIATAVRVSAALNSFRYDSVVCKTSEVDEGFCAEGVLDFVRDMAVKPCVDEKAVEQLLSFRRFTSVKPNWFYQQDWELDEDSFESLELEDMMGEDGLESSRIVDCSYDDQFYHDAKTWVPEVDVLVKPLVDNKGGDTCPDNLEDSTFFDKVDTDAQRSQNFFFPNDAKDTAVDVIHMPVNSNVQEICVINSIDLSIFDMDDRYDSPLCDADDDLFAGIHSSCCTEVADAKAQSHRKSSLENDSNEPENASLVTSLPQNDPSSAFSSSRSKVSTNLRHTALNESSAVPASSYSSFCIEVVDAEATSHRESSLGNDLNEAENANFVISLPQNDSSAFRSSRSKVLTHLEHTALNERSAIPVANYSSCCTEMAGVEAQSHRKSPLANDSTKAENANLVISLVQNGPNFAFSSRSIVPTNLEHTSQNTSSAIPAGSHSSLYTEVADSESQCHRKSSLANDSNGAENADLIISWRPNDSNSVLGIVPTNLEHTAQNECSAIPVISEIQPLRAVPLSGGRLYSLPINKCTIFSPIKAINVASKPLPGPEIPEMTPFAVTTPPISSNKRKHYELATFRTYKSHPTPVLAAKEKNSHGASQWKAYYSSPLTDVEPHPAKSSPVLLNMKFPKDYPLPSKEELEKKFGAFGPLDRTRTKVFFYTGVGQVVFLHSADAVTVSSLVTKKRVFGQANVRFWFYNIPPFAVDTMKPLTSPTLIHMKFPKDCSLPSKEELEKKFGVFGPLNCSRTAVFLDVRCGRVVFLHSADAAVAYDYAAKGRMFGQAGVRFWFSKNDVSINKSNKSWHNPKSCLKKSWLTRQTDKRENCSVRFSL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	21.480
SRP064423	SRR2545915	Juvenile tuber	20.850
SRP108465	SRR5643513	five period of Gastrodia elata	15.810
	SRR5643514	five period of Gastrodia elata	13.890
	SRR5643515	five period of Gastrodia elata	13.110
	SRR5643524	five period of Gastrodia elata	14.300
	SRR5643525	five period of Gastrodia elata	9.460
	SRR5643528	five period of Gastrodia elata	7.730
	SRR5643658	five period of Gastrodia elata	8.910
	SRR5643659	five period of Gastrodia elata	21.620
	SRR5643660	five period of Gastrodia elata	24.480
	SRR5643661	five period of Gastrodia elata	18.650
	SRR5643662	five period of Gastrodia elata	17.640
	SRR5643663	five period of Gastrodia elata	21.520
	SRR5643664	five period of Gastrodia elata	17.500
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	18.420
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	19.150
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	16.250
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	23.900
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	18.510
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	23.460
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	21.900
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	21.030
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	14.400
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	17.020
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.720
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.720
SRP279888	Gastro	Gastrodia elata tuber	19.90
	Juven	Juvenile tuber	35.44
	Mother_Gastro	Mother tuber of Gastrodia elata	8.42
	Mother_Juven	Mother tuber of Juvenile	14.05