Gene detail

Detail information of GWHGAAEX000569/evm.TU.scaffold_1.308

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2412	2.00E-115	Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor
nr	gi\|743864303\|ref\|XP_010904545.1\|	0	PREDICTED: protein GLE1 [Elaeis guineensis]
Swissprot	tr\|Q0WPZ7\|GLE1_ARATH	6.00E-116	Protein GLE1 {ECO:0000303\|PubMed:21189294}
trEMBL	tr\|A5C5D0\|A5C5D0_VITVI	6.00E-167	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN81849.1}
TAIR	AT1G13120	2.00E-115	embryo defective 1745

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000008	12691491	12719978	+

Transcript Sequence
>GWHTAAEX000569 ATGGCAGCCGATCAACCTCCTCCCTCACATAGCTGCCGAAATCTGGATTTGCGCAAGCCGTTAAGCCTTGCGCTCTCTCAATTCGCCCCCTCTTGGCTGAGGCCGATGGTAGCCGCCAGCCCTCTTTCCTCTCAGCTAGATGCTGAGAGACGTCGTCAACCTTCCTATCGGCTAGAGACCGAGAGTCACAGCACCTCTTCCTCTCAGCTAGAAGCCAAGAATCTGCAACTCTCCTCCATTCGAGTTGAGCTGAAGTCTTCTTCATTCATGACTAAAATCAGCTCATCCTATCATTTGTTCACTGGTTTCCTACTCGCCGACAAGCTTCTTTATTGTGCGACTCTGCTCTCCTCTCCTCGTGCAAGCTTGCGAAATCGACCTTCTTTCCGTACGTTCGACCGACCTTCCTTCTGCTTCCGGCAGATACTTCATGTTCTCATCGTTTCTTTCTTTGTAGTGGAACTCGACGATCCTCCTTCCTCCTTCGTCACCGGCTCAAGCTCCTTCCTTATGCCAATCTTTCCCCCGCGCGCCGACAAGGTACAACCCACCTCGTCTAAACCTAAACCTTATGGGGGATATGTCAAGTTAGAACTCTGTTGTCCAAAGAATGCGGCTATGGTAGCCTCAGCTGATCCTAAACCTCTCTGGACTTTAAATGATCTCTTATCAGACCTGAATTCCTTAGAGTTGCAACATGGTGCTTGTAATGCTGTTCCCTCCCCTCCAAAGCCATCTGGCTTGCGATTTGTTGAAGCAAAAGAGATGACTAGTGAGTGTCATAAACCTTTTGTTATGTGCATAACTGATGATGACGATGTCGAGGAATTAGAAAGTGAGGATGGAAGTGCTGATCATAGGTTAACTATTGGAACACGATTTACATGTCCTGATATTTACTTGAGTGATTCTGACGAATCTGCTGATGAATTACATAAGAAATTTACTCCATCTCGTCTCATGGAAAAGGAAAGCATTGAAGAAGGGGCTCTTTTTGAGCTTGAAAATGAACATCAACTTATGGTTAAGGAGCAACTTAGGAGCAAGTTGTCTGCTTTGGAGTTGTCTCAGAAAAATGAAAGTGATAAATCATCTGTTATCATGCGTCATCTTGAGAAACAAGTGGAAGAAAGACGGCAACTGGATAGGAAACTTGATAAACAATATCGAAGAAGGATAGCTGAAATACTTGATAATCATTTATCCATCTTGCAAAGAAATCATGAACAAAGATCTCAAATAGAAGAAAGAAGAATTAGAGATGATGCAACGCTTGAAGAAGCAAGACGAAAGGAGAAGGCTTTAATGGAGGAGAGAATGCGTCAAGAGAAAGCTAAAGCTGAGGCAGAGTCTAGGTTGGCAGCTATTAAACAATCTGAAGCACAGAAAGCAGCCCTTGAAGCTGAAAGGCGAACAGCTAATGAGGCTGCAGAAAAGCAAACGGTTAGAATATCAGAAATAGCTGCTGTGAATGCTTCTAAAAAGGAATTTGCTGAACTAAAAGAAGCAAATACTCAAACAACTGGAAAGATTAATCATGAAAACTCCGTTCCTAAGCCACTAGGTCTTAAGATTATTGCTTCTAAAGTTGCACTAAAAGCTGAGTCAAACCGTCTTGCAATATACAATGAAGTGGTTGGAAAGATGAATGCTGTTACCCAGAAGGATGTTGACCGGCATGGAAGGCAGATGTATAAATATATAAAGCAAATTGGAGGCACTATTGAAAATGCAAGAGCAAAAGCACAAGCATTAGTGCAACTTATTAAAGATCCTGCGTTACCTCGTCCAATATCAATTTTGATTTTTGCAAATAAGGTTGTGTCTCTTTGTGAAAACCCCAGTGGAAGTTTTGATAAGAGTGCCTTTGCATGTGGTTTGGTGATTCTTGACGTTGCTTTACAGGTTCCAAATGTGATGGATTTCATATTGGCCGAGTTTCACAGAGCTTGCATTTACACTGTACCGAAGCATATTCAAGCTTCAGATGCGGCTTCACAAACAAACGATTATTGGAAAATGTTGGGTTACCGAGAAGAAGATGGCAAGATTGAAACGACGAATGAATTTCTGAACCGCATCGAATCTTGCATGAAATTATACGCTGCGCTAATTCAGACCGAGATCAGCGGCGCCGAAAATCCTCATGGATTGAAAGAAGGATGGGCATGGCTTGCAATGTTCCTCAACTCGCTGCCAGCCAACAGAACAACTGCAGTCGCATTGGAAGCTTTTTTAAAGATGGCAGGATTTGCACTGTTGAGAAAATATAAGTCACAGTTTATAAAAGTGTTGAAGGTCATTTCAGAAAGGTTTGTGCCTACTCTGAAACTCCGCGGCGATGCGGTGCACGATGTTGTTATGAAGCTGGAGCAATATCTGGATGATGAAGTCTACCTGCGCGAGCCCGAGGGCAGGCATCTTCAAGGCTCTTCCCTATCCAAGTTCTTCCATTAG

Network for GWHGAAEX000569

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07817.12	GLE1	546	768	2.20E-50

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016973	Biological Process	poly(A)+ mRNA export from nucleus
GO:0005643	Cellular Component	nuclear pore

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	11.670
SRP064423	SRR2545915	Juvenile tuber	11.740
SRP108465	SRR5643513	five period of Gastrodia elata	8.370
	SRR5643514	five period of Gastrodia elata	8.570
	SRR5643515	five period of Gastrodia elata	7.660
	SRR5643524	five period of Gastrodia elata	9.400
	SRR5643525	five period of Gastrodia elata	6.220
	SRR5643528	five period of Gastrodia elata	6.250
	SRR5643658	five period of Gastrodia elata	6.660
	SRR5643659	five period of Gastrodia elata	9.240
	SRR5643660	five period of Gastrodia elata	10.160
	SRR5643661	five period of Gastrodia elata	9.130
	SRR5643662	five period of Gastrodia elata	9.400
	SRR5643663	five period of Gastrodia elata	9.910
	SRR5643664	five period of Gastrodia elata	9.870
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.170
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.760
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.640
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.130
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	10.000
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	9.520
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.550
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	10.200
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	8.840
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.700
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	9.190
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	9.190
SRP279888	Gastro	Gastrodia elata tuber	16.31
	Juven	Juvenile tuber	13.19
	Mother_Gastro	Mother tuber of Gastrodia elata	15.03
	Mother_Juven	Mother tuber of Juvenile	16.22