Gene detail

Detail information of GWHGAAEX000571/evm.TU.scaffold_1.311

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1410	Nuclear transport receptor RanBP16 (importin beta superfamily)
nr	gi\|672194035\|ref\|XP_008776188.1\|	PREDICTED: exportin-7 isoform X1 [Phoenix dactylifera]
trEMBL	tr\|A0A067KWK8\|A0A067KWK8_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP40596.1}
TAIR	AT5G06120	ARM repeat superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000008	12765130	12816434	-

Transcript Sequence
>GWHTAAEX000571 ATTGCTTTCCTCGTCGCTAATCCTTCGCTTAACGCTAGCCGATTCTATCTATTTAGGAAGCCGCGGCACGGCTCACACCATGTCCCTCCGTAAAACAGTCGTTCAAACGGACGGCTCTGATTCTCCAAGAACTCGGGACTTGTTCTCCTGCGAGTCCCTCGAGTACTCTTGATCACCGGTTTAATACAGACCCCTCCAACTGAGCGCTTCACGCCGTTTCCTAAATTGATCAGCTTAAATCGAGGGAGTGAACAGAAAAACGGAGCAGCGATCAAGAGCTAGAGAAGATCGGGCGATTGATTGTTGGTGAGAGGAAGAGAGTTACTGTGAGACTCGAAGGTTTATGCTTCTTTCCAGCTGGCAGTTGTTGGACATTTCTCAGCAGCTTCCTTTTCGTGGCTTTTACCTTTTATTTCTGTTTAGGTTTTGTCATCCGTTGTCATTGTGTATCTTGGGAATCTTTTGTTAAGATATATCATGCTGTATATATGTTTACAATGCAGCTACCAGTGGTAAAAACATGTATTTCACCTCTTAACTCTGTTCGATGTTACTATTTTTCATGTGAAACAAGATCATGTTTGGTTTGCACTTTGTACATTGTATTACTGACTCTATGGCAGCTATATATGGGCAATTTGTAGATGTAAATTCTGTTTCTTTGGAGCCAAGAATCCACTGACGTGATTAATCCTCAAGTGCTCTGAATATTTACCAAGTATTTTCTTATAAATGGAGAGCCTAGCTCAACTTGAAGCCTTGTGTGAAAGGCTTTATAATTCTCAAGACTCCGCTGAACGAGCTCATGCAGAGACCACTTTAAAATGTTTTTCTATGAACGCTGAATACATTTCACAGTGCCAATACATATTAGACAATGCGTTGACACCTTATGCTTTGATGTTGGCTAGTTCAAGCCTCTTGAAGCAAGTGACGGATCACAGTCTTTCTTTGCAGCTGCGACTTGATATCCGGAATTACGTGATAAGCTATCTTGCCACAAGAGGACCTGAATTGCAGAATTTTGTAACTGGATCTCTGATTCAACTTTTATGTCGAATTACAAAATTTGGTTGGTTTGATGATGACAGATTCCGAGAGGCTGTGAAAGATGCTACAGATTTTTTAAGTCAGGCAACGTCTGAACATTACTCAATTGGTTTGAAGATTCTAAATCAACTTGTCTCTGAGATGAATCAGCCAAACGCTGGATTGCCACTAAGTCATCATCGAAGGGTTGCATCAAGTTTCAGAGATCAGTCACTTTTTCAAATATTTCAAATATCTCTGACATCATTAAGTCAGCTAAAAAGTGATGGAAATATGCCAGTCTCGAGTGTATTGAAGCAGCTTACACTTTCCCTTGCACTGCGATGTTTGTCATTTGATTTTGTTGGAACTTCTCTTGATGAGAGTTCTGATGAGTTTGGAACTGTTCAGATTCCTTCATCTTGGAGACCTATCATAGAAGACACCTCAACTCTTCAAATATTTTTTGATTACTATGGTACAACTGAGCCGCCTCTTTCAAAAGAGGCTTTGGAATGCTTAGTTCGCCTGTCTTCTGTAAGACGGTCTCTTTTCCCGGATGATTCCGCTCGGTTAAAATTTCTGGCTCATCTGATGTCAGGAACTAAGGAAATACTTAAAATTGGGCAAGGTCTTGCTGATCATGATAATTATCATGAATTCTGCCGACTTCTTGGGCGCTTTAAAGTAAATTATCAGCTATCAGAGCTTTTAAATGTGGAAATATACAGTGAATGGATACGTTTGGTTGCGGATTTTACAACGAAGTCATTGCAGTCTTGGCAGTGGGCCAGCAATAGTGTATATTACCTTTTGGGACTTTGGTCAAGATTGGTGACATCTGTGCCATACCTTAAGGGCGACACACCAAGTTTGCTTGATGAAACCGTTCCTAAAATTACGGAAGGTTTCATCACCTCTAGATTCAACTCTATCCAGGCTGGCTTCCCGGATGACTTGTCTGAAAATCCATTGGACAATGTTGAGCTTCTTCAAGACCAGCTCGAGTGCTTTCCATACCTCTGTAGATTCCAGTATGAAAGCAGCAGCATTTACATTATAAAGATCATGGAGCCTATACTGCAAGCTTACACTGATAGGGCAAGATCACCTGTGTCCAAAGATGCCAGTGAACTGGCGGTAATTGAAGGACAACTTGCGTGGCTGGTTCATATTATAGCTGCTATTCTTAAGATTAGGCAAACCACTGGTTGTAGTATGGAGTCACAGGAACTGATAGATGCTGAACTCGCAGCTCGTGTTTTGCAGCTGATCAATGTTGTAGACAGTGGCCTGCACGCACAGAGATACGGGGAAATAAGTAAGCAAAGACTTGATCGGGCGATTATCACCTTTTTTCAGAACTTTCGTAAATCATATGTTGGTGACCAAGCCATGCATTCATCAAAGCAGTTATACTTAAGGTTATCAGAGCTTCTAGGTTTACATGATCATTTAGTTCTACTGAATGCCATTGTTGGAAAAATTGTTACCAACCTTAAGTGCTACACTGAGAGTGAGGATGTAATTGAGCATACTTTGTCCCTGTTCTTTGAGCTTGCATCTGGATATATGACTGGGAAACTTCTACTTAAGTTTGATACTGTTAAATTTATCATTGGAAATCATACGAGGGAGAATTTCCCGTTTCTGGAGGAATATAGATGCTCTCGGAGCAGAACGACCTTCTATTACACTATTGGTTATCTGATCTTTATGGAAGACAGCCCTATAAAATTTAAGACTTCAATGGATCCGCTTCTGCAGGTTATGATAGGGCTTGAATCAACTCCAGATGCTGCTTTTCGTACTGATTTAATGAAATATGCTTTTATTGGCTTGATGAGAGACCTTAGAGGCATTGCAATGGCAACAAATAGTCGGAGGACATATGGGCTTCTATTTGATTGGTTATATCCTGCACATATGCCACTTATTTTGAAGGCCATTGCTCTTTGGACTGATGCACCCGAGGTTACTACTCCTCTTCTAAAGTTTATGGCTGAATTTGTCTTGAATAAGGCTCAGCGTTTGACTTTTGACTCATCCTCCCCTAATGGTATACTTCTATTTAGAGAAGTCAGCAAGTTAATTGTAGCTTATGGTTCGAGGGTTTTGTCCCTCCCAAATAGCTCAGATATATATGCCAACAAATATAAGGGCATTTGGATATCCTTGACTATTCTTTCAAGAGCTTTGTCCGGAAATTATGTCAATTTTGGCGTTTTCGAATTATATGGTGATAGGGCTCTTGCAGAAGCACTTGATATTGCTCTTAAGATGACACTATCTGTCCCTCTGGTTGATGTATTGGCCTTTCGAAAGCTTACCAGAGCCTATTTTGCATTTATGGAGGTTCTCTTCAACAACCATATTACCTTTATCTTGAATTTTGATTCAACTACTTTTATGCGTATTGTTGGATCTCTAGAATCTGGTTTGAAAGGTTTGGATGCCAGCATCTCATCTCAGTGTGCCAGTGCAGTGGATAACCTTGCTGCATTTTACTTCAACAACATCACCATAGCAGAGTCACCTCCACCACAGGCTGCGCTCAATCTTGCTCGGCATATTGGCGAGTGCCCCAACCTGTTCCCTGAAATTCTGAAGACACTTTTTGAGATTGTTCTATTTGAAGACTGTGGTAATCAGTGGAGCCTTAGCAGGCCAATGCTAAGCTTAATTTTGATAAGTGAACAGGTGTTCAGCGATTTGAAAGCACAGATTCTGGCCTCACAGCTGGTGGATCAGCAGCAACGCCTCGCACTCTGCTTTGATAAGCTGATGGCGGATGTGAACCGGAGTTTGGATTCACGAAATCGTGACAAGTTCACCCAAAATCTCACAGTCTTTCGGCACGACTTCCGCATCAAGTAGGCATCATTTAACAGTGACCAACCCTGCATGCTCCTCTCATAACCACCTGACAAATGGCACAGTTTGTAAATACCCCTACTTGGATGCTGTATTGAAGGGAAAAACCGGCTATGGATGTATGAAGAAGACAATGTGTTTGATTGTTCTGTTGGTTCTTCCTTCTATTTGGGGACTATTATTATGTAGCAGCAGGTGTCTGTCTCTCTTCTGTACAGCGAAATTTTATTAGATGCTGCCAAGGGAAACGCAGCAGTACTCATGTGCTTTTACCCTAATCTCTCATTCTTTTCTTTCTTATCGCATAAGAAGAAGATTAAAATGAATGTAAATTTTATTCTTATATATATGCATTGCATTGTCTTGCATACACCTGCATAAACACGTGTTGTGATGGTATTGGTTGGAACTCGATTCCTGCGCCGTTTGGAATAGAAGCAAAATGTTAGTTTCTGGGACTTAGTTTTTTCACGCGTTTGCTGATTTTTTGCAGGGCTTCTTCTCTTCTCTTGTGGCGCCGCACTGTTCTGTTAGATGGAATCGCAGTCATCGACGAAAGGCATGCAAATTGCTTGCTGTCATCTCTCATTTTTTGCTTGGACAAAATCTGGTAAGAAAAAGCCTTAGTATTTCAAAAATGCTTAAAAAGCAGTAATAAGGGAATTCAAAAAGAAAGGAGATTAATGCAGTTGTGGCTTTTCGCTCAATTTTTATATTAACTGACAAGCAATTGTTTTATCTTTTGCTTGTTAGTGTTGCTGTCCCATACGAACTCCCAAAAGTAGCTTGCGGCCAAAGTAGTTTTGTAAGAATCAAATCTTAATGTGTGATCTTATTTCATTAAATTATTGCGAATGTATTATTAGGAAGATTCTTGAATGTTTACAGTAAAATTTTAATCTAGTTTTTTGGTTGTGCCAAATCTTTGTATTTAATTTATATTTCTTAAAGATTTACAGGAAGATTCTTGAAGGATCCTAACT

Network for GWHGAAEX000571

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03810.18	IBN_N	26	89	6.10E-06

Protein Sequence

>GWHPAAEX000571
MESLAQLEALCERLYNSQDSAERAHAETTLKCFSMNAEYISQCQYILDNALTPYALMLASSSLLKQVTDHSLSLQLRLDIRNYVISYLATRGPELQNFVTGSLIQLLCRITKFGWFDDDRFREAVKDATDFLSQATSEHYSIGLKILNQLVSEMNQPNAGLPLSHHRRVASSFRDQSLFQIFQISLTSLSQLKSDGNMPVSSVLKQLTLSLALRCLSFDFVGTSLDESSDEFGTVQIPSSWRPIIEDTSTLQIFFDYYGTTEPPLSKEALECLVRLSSVRRSLFPDDSARLKFLAHLMSGTKEILKIGQGLADHDNYHEFCRLLGRFKVNYQLSELLNVEIYSEWIRLVADFTTKSLQSWQWASNSVYYLLGLWSRLVTSVPYLKGDTPSLLDETVPKITEGFITSRFNSIQAGFPDDLSENPLDNVELLQDQLECFPYLCRFQYESSSIYIIKIMEPILQAYTDRARSPVSKDASELAVIEGQLAWLVHIIAAILKIRQTTGCSMESQELIDAELAARVLQLINVVDSGLHAQRYGEISKQRLDRAIITFFQNFRKSYVGDQAMHSSKQLYLRLSELLGLHDHLVLLNAIVGKIVTNLKCYTESEDVIEHTLSLFFELASGYMTGKLLLKFDTVKFIIGNHTRENFPFLEEYRCSRSRTTFYYTIGYLIFMEDSPIKFKTSMDPLLQVMIGLESTPDAAFRTDLMKYAFIGLMRDLRGIAMATNSRRTYGLLFDWLYPAHMPLILKAIALWTDAPEVTTPLLKFMAEFVLNKAQRLTFDSSSPNGILLFREVSKLIVAYGSRVLSLPNSSDIYANKYKGIWISLTILSRALSGNYVNFGVFELYGDRALAEALDIALKMTLSVPLVDVLAFRKLTRAYFAFMEVLFNNHITFILNFDSTTFMRIVGSLESGLKGLDASISSQCASAVDNLAAFYFNNITIAESPPPQAALNLARHIGECPNLFPEILKTLFEIVLFEDCGNQWSLSRPMLSLILISEQVFSDLKAQILASQLVDQQQRLALCFDKLMADVNRSLDSRNRDKFTQNLTVFRHDFRIK

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006886	Biological Process	intracellular protein transport
GO:0008536	Molecular Function	Ran GTPase binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	40.810
SRP064423	SRR2545915	Juvenile tuber	27.210
SRP108465	SRR5643513	five period of Gastrodia elata	22.110
	SRR5643514	five period of Gastrodia elata	27.110
	SRR5643515	five period of Gastrodia elata	26.540
	SRR5643524	five period of Gastrodia elata	30.200
	SRR5643525	five period of Gastrodia elata	44.200
	SRR5643528	five period of Gastrodia elata	54.300
	SRR5643658	five period of Gastrodia elata	51.300
	SRR5643659	five period of Gastrodia elata	18.450
	SRR5643660	five period of Gastrodia elata	18.440
	SRR5643661	five period of Gastrodia elata	16.190
	SRR5643662	five period of Gastrodia elata	17.330
	SRR5643663	five period of Gastrodia elata	17.490
	SRR5643664	five period of Gastrodia elata	18.510
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	28.730
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	27.780
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	29.190
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	31.180
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	37.490
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	42.200
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	32.120
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	36.320
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	29.900
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	31.130
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	28.080
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	28.080
SRP279888	Gastro	Gastrodia elata tuber	23.08
	Juven	Juvenile tuber	26.91
	Mother_Gastro	Mother tuber of Gastrodia elata	47.85
	Mother_Juven	Mother tuber of Juvenile	40.67