Detail information of GWHGAAEX000572/evm.TU.scaffold_1.312


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743876246|ref|XP_010907539.1|0PREDICTED: F-box protein At4g18380-like [Elaeis guineensis]
Swissprottr|O49508|FB237_ARATH3.00E-108F-box protein At4g18380
trEMBLtr|M0SFQ6|M0SFQ6_MUSAM3.00E-174Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P18400_001}
TAIRAT4G183809.00E-108F-box family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000081284857112850542+
Transcript Sequence

Network for GWHGAAEX000572

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms17.380
SRR2545915Juvenile tuber19.220
SRP108465SRR5643513five period of Gastrodia elata23.680
SRR5643514five period of Gastrodia elata18.830
SRR5643515five period of Gastrodia elata17.620
SRR5643524five period of Gastrodia elata18.270
SRR5643525five period of Gastrodia elata18.470
SRR5643528five period of Gastrodia elata16.690
SRR5643658five period of Gastrodia elata16.000
SRR5643659five period of Gastrodia elata22.100
SRR5643660five period of Gastrodia elata23.930
SRR5643661five period of Gastrodia elata25.950
SRR5643662five period of Gastrodia elata23.770
SRR5643663five period of Gastrodia elata18.670
SRR5643664five period of Gastrodia elata19.160
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_120.490
SRR6049655Rhizomagastrodiae_C368-T10_good_123.790
SRR6049656Rhizomagastrodiae_C368-T07_good_119.500
SRR6049657Rhizomagastrodiae_C368-T07_good_122.310
SRR6049658Rhizomagastrodiae_C368-T04_good_120.000
SRR6049659Rhizomagastrodiae_C368-T04_good_125.000
SRR6049660Rhizomagastrodiae_C368-T01_good_123.840
SRR6049661Rhizomagastrodiae_C368-T04_good_120.550
SRR6049662Rhizomagastrodiae_C368-T01_good_120.740
SRR6049663Rhizomagastrodiae_C368-T01_good_120.280
SRR6049664Rhizomagastrodiae_C368-T10_good_118.660
SRR6049665Rhizomagastrodiae_C368-T10_good_118.660
SRP279888GastroGastrodia elata tuber 20.24
JuvenJuvenile tuber27.74
Mother_GastroMother tuber of Gastrodia elata 26.85
Mother_JuvenMother tuber of Juvenile 21.25