Gene detail

Detail information of GWHGAAEX000573/evm.TU.scaffold_1.314

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1667	2.00E-52	Zn2+-binding protein Melusin/RAR1, contains CHORD domain
nr	gi\|743764237\|ref\|XP_010912324.1\|	1.26E-62	PREDICTED: cysteine and histidine-rich domain-containing protein RAR1-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q6EPW7\|RAR1_ORYSJ	3.00E-54	Cysteine and histidine-rich domain-containing protein RAR1
trEMBL	tr\|M0UAZ3\|M0UAZ3_MUSAM	4.00E-62	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP20850_001}
TAIR	AT5G51700	2.00E-52	protein binding;zinc ion binding

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000008	12861873	12864873	-

Transcript Sequence
>GWHTAAEX000573 CAAAAACATGTATTCTCTATTTTTCTTACTCTAACTCAACATGTACAAATCCATTGTTTTGTTTTTTTTGCAACCCTGCTAATTGGAACAACTTATGCACAAATTAAAAAATAGCAAAAATTCAAATCACATATAATTTTCTTAATAACATCTGTACAGAACAGAGCTGTGATTTAAAAAAATACATAGACTGCACAATATAGCAAAGGCAGGGGGCTGAGAATGCTACATTATTGCACAAAAAAAAGTGTATGAATCATTCAACTTTACAAATTCAAAAAATAAACCTAAAATGCTTGACCTACACAAAAAATTGGCTGTCAAGGACCAGGACGGCACTGGTTGGGGACGGCTACTTTGATGGCAACACGGACAGTGAGTAGAGCTTTGATGTTGGTGGTGAAGGTGGGTGGTACTTTTTATCGCAAAGAGACCTTGGTCATCAAGAGTTGGCTCACTGCAATGTTTTTGAAAATGTTGAGGGTTAGGTTTTTATTCAATGAAGCGAATGGTAGTCTGCTAAAATGAATTTGTGTAATTTCAGAAGTAGGGAAGCTGCATAGTTTGTGGATAGTGTGATGGGAGAGCTGCCCGAAGCAATATAAACTTAGAAACTTCTTAAAATTCTTGCGAACTCAGCCAACCAAACACGGAAAATTTTTTTGAGCCCAGCTGCCCCAAAGGGCTTTTAGTTCTTGGACTTTTCCATTTGCGTATACTTTGTATATTATAAAATACCTTGAAAGTTAGTGTTGTAAAGAAAACAAGGAAGTGTGGATAAAACAAAACTTTATCGTTGAATTCTTATTTCGTAACATACTTGCTGTATGTGATTTAAACTTTTTAAATTTCATCACAGGAATTTGGTATTTCCAAAATTTGCTCTAGATTTCACATCATTAGTCCATTGCATGTGAGACCATCAAGAAATTTTGTACAAAATTTATTTATGATTTTATGTTAATGCATTGCAGTAAACAAGTCACCTTGTGCGTGTTTTCAAGTAGCTGAACGTACTTTTTATTATTTTTCTTACTTGTGCCTTAACTCTATTTTCTCTGACTATTGCAACTCGGTGCTGATGCTTCCTACCTGATTGTGACCCTCTCATCATCCTCTGTCAGGGGCCAATTTTTCATGATGGTATGAAAAAATGGAGCTGTTGCAAGCAAAGAAGCCATGATTTCAGTTTATTTTTAGCGATTCCCGGATGTAAGACAGGCAAACATACTACAGAGAAACCGATCATGAAGGCTGTATCGGTAAACACTCAGAAATCAATCCCAACGCCTATTCAAAGCAAAAGGGCTGACGATTCCGCTCCCTGTTCAAGGTGTCTCCAAGGTTTCTTTTGCTCAGATCATGGCTTAAAACCAGGCATCTCAAAACCAAATGGGCAATCCATCTTAATGGATGAACCTGCAGCCAACATTCATGCTCCAGTCAAGAAAATAGTTGATATAAATGAGCCGCAGACTTGCAGAAACAAAGGATGTGGAAAAACCTTTAAAGAGAAGGATAACCATGAGGCTGCATGCCATTATCACCCAGGTCCTCCAGTATTCCATGACAGAATGAGAGGGGTAAAGAAAATCTTGATCCCATTCTGGTGCTGCTGCTAATTTATGTCATTTTCACGCCACAGTAGAGCAGTAGAAAAGGCTAGTTGTTCATATACAACTCGTATTCTGCTCATTATTAAGAAGCTTGGGTTTGGCTTTCAGTTAAATATTTGATCCCATGACAGAACCGAGCTTAAACACCTATTTAAAGCTCGATTCTTAATTGAGCTGAACATTAAGCGTCTATTCAGCTTGATCATATATATATATATATAAATAA

Network for GWHGAAEX000573

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04968.11	CHORD	1	28	1.10E-09
PF04968.11	CHORD	111	158	3.00E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13458	RAR1	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	19.980
SRP064423	SRR2545915	Juvenile tuber	13.830
SRP108465	SRR5643513	five period of Gastrodia elata	7.390
	SRR5643514	five period of Gastrodia elata	7.840
	SRR5643515	five period of Gastrodia elata	6.810
	SRR5643524	five period of Gastrodia elata	8.400
	SRR5643525	five period of Gastrodia elata	3.660
	SRR5643528	five period of Gastrodia elata	3.490
	SRR5643658	five period of Gastrodia elata	3.910
	SRR5643659	five period of Gastrodia elata	6.620
	SRR5643660	five period of Gastrodia elata	6.780
	SRR5643661	five period of Gastrodia elata	5.730
	SRR5643662	five period of Gastrodia elata	5.460
	SRR5643663	five period of Gastrodia elata	4.660
	SRR5643664	five period of Gastrodia elata	5.430
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.620
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	10.350
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.910
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.420
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.530
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	9.720
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.610
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.740
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.860
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.050
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.400
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.400
SRP279888	Gastro	Gastrodia elata tuber	10.02
	Juven	Juvenile tuber	13.12
	Mother_Gastro	Mother tuber of Gastrodia elata	5.62
	Mother_Juven	Mother tuber of Juvenile	7.82