Gene detail

Detail information of GWHGAAEX000579/evm.TU.scaffold_1.321

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1878	2.00E-112	Nuclear receptor coregulator SMRT/SMRTER, contains Myb-like domains
nr	gi\|743842553\|ref\|XP_010937838.1\|	0	PREDICTED: uncharacterized protein LOC105057083 isoform X2 [Elaeis guineensis]
trEMBL	tr\|M0TXE9\|M0TXE9_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P04400_001}
TAIR	AT3G52250	2.00E-112	Duplicated homeodomain-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000008	13164336	13196674	-

Transcript Sequence
>GWHTAAEX000579 ATGGAGTCACCGATCTTCCATTCAGCAGCAAGGGAGTCGCCGATCTTCCCTCGACGCCATCAAGGTGATGCTATAGGAGAAAAATATGACAATTCTTTTCATCTCTTGCAATCAACAATGAGGAAAATTAGGAAACTTTTTGGGAACGATGGCATCTTTCAGTTCGTTAGGGATCGCCCTTCAGCTCTGCATCAGAAAAAGAGAGCGGACGGCTGTGATTTTACGCTGGAAAGGAGAGCGGGAATGAGAGTGAGAGCGAGGGAGGGAGAAATGTTAAGAAATCATTTATTAATGCAAAAACATTTTGCGGATGCGAGCGGGGATTATATTCGGTTTAGTTCACTGGGGATGGCTTTGAAGTCCGGGCTTATTTTTTTTTCTCCGGCTTCTCGCAACTCCTTTTCTCCTCTTCTTTTTAAAGCTGAGTTGCTCGGCGGAGTGCGGCGGCGGCGGGTTCAATCGTCGGTGCACGTCGGAATCTTCTTCCTCTCAGTTCTGAAGACTGGCCGAAGTTCCTTGGACTTTACTTCTGTGCTCTTGTTTTGGATTAACTGGGCTTTGGATGCAGTCCTGCGGTTTCTGTCTTTCATGCCTTCTGATTCACATCCCTGGGATCGCAAGGAGGCCTTCATCAAGGACCGGAAGCAAGAGCGAGGCTCGGTTTGTGATGGCGTAGTTGGATTGGGAGGCTCCTGTTCAACTTCACGATGGCGGGAGCCCTACCATACTCCAAGAGACTGCCCTCGGGCCTCTCCGCACCGGCCTTTCACAGGTCAGCACAGGCACGATGGAGGAGGATACAACCTTTTATTTCCTGAAGAATCTGGCGGGCTTGGTTGCACGCCTTCTCGTGCCGGGGACAGATTTTGGCCGGAAGAGGATATCGTTAGGCCTTCTTCAGGAAGATGCGGTGGCAGTGGCAGGAGTAGTTGCAGCGCTGGAAGAGAAGCCCGGGGATCTTCTCGGCTATCACCTTGCCTTGATTCCAGCGGCGAACCCGCTGGGCAGCCCCTTACTTCTCCCATAGCTTCTCAGATGTCTCCCGCTGTTCCAATAACTCATGTGCCGTCTTCCTCCCCTTCGACCCCTTCGAAAAATTTGCTTGACAAGAGCGATTGCCCAGCAATTGAAGCCTTGGGCTCAGGTCAAAGGTATGATCGTGAGCTTTCTCTCAGTTCGATGTCTTGGAAGCCGCTCAAGTGGACTCGTCCTTCTAGTTTGCCGTTGTCAAAGGCATCCCGATCCGAGACTGAAGAAATCAGCCTCGGGATCTCGGCGCCTCAGGTGAAGGAATCCCCGATGAGATCTCCTGCGAGTTCTCATTTTTTGTTGGATTGTAGAACCCAGAGTAAGAAACCACGCCTTGGCTGGGGTCAGGGCTTAGCAAAGTATGAGAAGCAAAAGGTCGAAGGATCTGCAGATGTTTCCGTTTATAATGGATCTATCCATTCTACCAACACTGTTAAGGAAATTGCCAGTGATTTGAGCCCTAAGACATTTATTTTTCCTGGATCCATGTCTCCAGCTACTCCTACATCAGCTACATGCAGTTTAATTCCGGATGAAAAGTTCCCTGTAAAGAGTTTGAATGTTGACACTGATAAAACTCAGTGCAGTGATTCAGCTGGTCTTGGGCCTCAAAGTTTACCGGAGGATGCTATCATAAATTTGGATAAACTGGATTCCAATTCCATAAACACACTAGCTTTACTTCTAACTGATTTGGTGCAGCCTGAAGATGTCTGTTCAGGCGACTCCTCAGTCACCCGAAATTCGACAATAAATAAGCTGCTTGTTTTAAAGAAAGACATTTCAAAAGAATTAGAAAAAACTGAATGTGAAATTGATTTATTTGAAACTAAGCTCAAATCTATAAACTGTGATGGTCATAGGACTAATTTTGAGGAAGGCGCATACATGTCTCCAAAAAATGATGCAGCACAACATAGTAAAATTTCAGTTGACGCTTCAAAGCCATTAACAGAAATATCATCTCTGAATAATTGTTTGCTTCTTGAAAGTGAACAGGCTATACAGAATTATATATCAGAAGAGCATGCAGCTGTTATAAAGAACACAAATCATTCCTCTGGAAGTATTTTATGTAATAATATTCATATTCCCTCTTTCAAGAGAGTGAACACTAGTTCTTGCAATATTCAATGCAATGATATTAAGTCTCAATCTTGTGATGCCAAGCCTCAAATGCCAGTTGTCATGCGATTAATGAATGATGATATGTGCAGTCATGAACTTCATTATTCTTTGGACTATAGAAATGAAAATATGGTTGGCAGTTTAATAGTTTTTATTACGGACATGAATAAGGATGCTGCCAAAAGAGCTTCAGAAGAATTTCATCAGGCCATGCCCTCTGGTTTGCCAAAGTTTGATATCTCAGAATTAAATTTTTTTCAGTGCAAGAAGAATTACATGCATATCAGAGGGAATCTGGTGAGGAACAAATATTTGTTGGAATTCAAAGTGCGTGTTCTTGCACTAAAGTTTAAAGCATTACACTACTTATGGAGGGAAGATCTTAACCTACTTAATTTAAGAAAGCATCGGCCAAAATCAAACAAGCGTTCTGAAACAAATAGCCGTGCATCTAATTCTGCTTTACAGAAGCATCAATCTTCCGTCTGCTCTCGATTTACATTACCAGCAGGAAATCCAACTCTGGTTCCTACATCTGAAATACTGAACTTTACCAGCAAGTTACTTCTGGATTCTCAGGTCAGGCCTTACAGAAATAACTTGAAGATGCCAGCACAAATTTTCGATGAAATTAATAGGAGGTATTCTAGATTTAAATCAAACAATGGTTTAATAGAGAACCCACCTGCTATTGAGAAGGAAAGAGTGATGGTGAATCCTTGGATGCAGGAAGAAAAGGAAGTTTTCTTAGAAATGCTTGCTACATTTGGTAAGGACTTTAAAAAAATTTCTTCCTTTCTTAGCCACAAATCAGTAGCAGACTGCATTGAGTTCTATTACAAGAACCACAAGTCGGAGAGCTTTGCAGAAGTGAAGAAGCAGCTTAAGTGGAGAAAACAATTGCAGAGTCGGCAGGGCAACATGTACTTAATTACTTCAGGAGCTAGGCTTAATCGAGATTCTAATGATGCTTCACTTGATTTGTTGGGTGCGGCTTCATTGTTAGCAGCAGATAGCAGCGGTGGCAGAAGAAATAGTCAAAAGCAAAGTGCCAAGCCAGGTTTCCCTGACACTAGATTTTCTCGTAGGAGTAATGGTGCCTTGGAGAAGTCTAATTGCGAAATTTCAGGAAACGAGAGAGAAGTTGCTGCTGCTGATGTGCTAGCGGGCATATGCGGTGCCCTGTCTTCTGATGCATTGAGCTCTTGTATTACTAGCTCTATTGATCCATCAGAGAAGATGCATTTTACAGCAAATGACCACTCTCTGACACCGGAAGCAGCCCACACTATTGATGAGGAAGAAACGTGCTCTGATGAAAGCTCCGATGAAATGGAATCAGCTGATTGGACCGATGAGGAGAAATCCCTGTTCATCAGAGCATTGAGCATGTATGGCAAAGACTTTGTTAAAGTTGCTCATTTTGTCAGAACAAGGTCACGTGATCAATGCAAAATTTTTTTTAGCAAGGCGCGAAAGTGTCTCTCTCTTGATGTGATTAACAATGGGTCGGCCAATGGGGTGATGCCATTGAGCGATGTTAATGGAGGGAGAAGTGATACTGAAGATGCTTGTGCAGCTGAGATTGATTCAGCAATCTGCAGTACACAGTCATGCTCTAAAATGGATGTTGAATCCACACAATCCATGTTAAAAACCTGTAGCGAAGGGCATACACAAACCTGCAACATTGTTCAACAGGTTGATGTAGATAGGCCATGCGAGCAATGTGATGTTGGTGCATCAATTCCAGATGAAGGTGAGGGTAAGCTTGAAATTAAGGCTTCAGCAGATGATGAAGAAAAAGTTATTATTGGGAGGGGCGATATTGATGTTGGGAAAGACCATGCGGAAGTCGGTTGTTCTGTTTCGAGGAACAGTGAATCTGAACATGTTTACAAAGCTGCTGAGTTTGTCAATGCAGAAACAAATAATGAAAACGACAACGACAAATCAGCTGCGGGGAAATCTGCTGTCAAGTTTGATGGTGAAATTGAGCTCAAGTTGCTGAGTACTGATGGGACCTCACAGAACGCTAGCTGTGGAGTTACTGTTGCTGATGAGCTGAATAAAGTCAACTCAAATATGTCAGTTGGGCAGCAGAATTCTGTAATTGAGGAGAGTAATGCCCATGTTAAAATTGACGAAACTGCTGATGCAGGTGATTTTTTATTCTCTGGCTCTAAACCACCTTCCAACGGCAAACCTTGCAATGATAGAGAACAAAAGAATGATGAATGCACTAAACTTCCAGTCTCCTCCCGTTTCCAGCACAATGTTCCATTGGAGCTGCTTTGTCCTTTGCAAAAAGGGCCTGAGACTGAGATAGTGCAGCCAAAGGCTTGCCTTCCCCCCGCAAGATTGAATTGTGTGCTGCCAGATTCGTCACCCATTCCTCTTAAGGAGGCCGGTAAGGAAGCTCCCGTTGCCATTCTCAATTTGCAGGATGGGGACAAGAAGCCCCGACCAGAACCAGCTGGTAGAGGGGATTGTTCCCTATTTCCAAATCATGTTGATTCTTCCTTGCATATTGCTGCCTTACCTTCGTCGGCCAAGAATGATAAATACTTGAATACAAACGGAAAACTGTTTGATGGAAGCTTGCCTTTTGAAATATCTGTAATGGCTAATAATACCACTACGCAGGCGAAACTCTCTTTACTCACAGAATTGAACAGTGATAATAAGCATGTTGGCACCGCTGAGGTCTTAACTTCTCGGCCCGGGAGCTCACTGCCTTCCAGGCCGGAGCGCCAGTCAGATAGATATTTTGCCGATGCTGTATCCGACGCGTGCCAGTCTTCAGAATCAGAGGATCAGCTTCAGCGAGTAGGGGATTTGAAGCTGTTTGGTCAGATTCTCACCCATCCCTCGTCTCAGAAACCCGCTTCGTCCCTGGAAGGAAACACGAGCTCATCATCTCCCAGGCGCAGCAACGCGAGCGCTACTGCAAATTCATCCAGCTGCTGGAAGGATGCGGCTATATTCGCACCGTTCAGACCCGGACGGAATGGCAAACTGCACCATCAGCAGCCAGGGGAGATGCCTCAGAGAAGCTACGGCTTTTGGGACGGCAACAGGATTCAGACAGGATTCTCATCCTTGCCAGAGCCAGCCGCCATACTGGCAAAGTATCAAGGGCCTTTAACTGTCATGCCCTTCGGCATGCCCAAAGAAAGTGCTGCTGCTAGCTCCGATTTTCAGCAGCAGCTGCAGCTGCAGCCTCAGCCCGAAACAGAATCGTTGTCCTCGCATAAATATCTGGAGAATTATCCCGAAACTCAGAAAAAAAACGGCTTCGACTTGCTGTCCAGTTTCCAGCAGCAAGGGAGGATTTTGCGCCTCGGCGTCAACCATCGTTATTCGGGTAGAAATTCGAGTGTACTTTCCGGGGATTTGGAGTCTTTGATGGGAGGAGATGCGGGAGGGAGGTAA

Network for GWHGAAEX000579

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.30	Myb_DNA-binding	1169	1207	7.00E-08

Protein Sequence

>GWHPAAEX000579
MESPIFHSAARESPIFPRRHQGDAIGEKYDNSFHLLQSTMRKIRKLFGNDGIFQFVRDRPSALHQKKRADGCDFTLERRAGMRVRAREGEMLRNHLLMQKHFADASGDYIRFSSLGMALKSGLIFFSPASRNSFSPLLFKAELLGGVRRRRVQSSVHVGIFFLSVLKTGRSSLDFTSVLLFWINWALDAVLRFLSFMPSDSHPWDRKEAFIKDRKQERGSVCDGVVGLGGSCSTSRWREPYHTPRDCPRASPHRPFTGQHRHDGGGYNLLFPEESGGLGCTPSRAGDRFWPEEDIVRPSSGRCGGSGRSSCSAGREARGSSRLSPCLDSSGEPAGQPLTSPIASQMSPAVPITHVPSSSPSTPSKNLLDKSDCPAIEALGSGQRYDRELSLSSMSWKPLKWTRPSSLPLSKASRSETEEISLGISAPQVKESPMRSPASSHFLLDCRTQSKKPRLGWGQGLAKYEKQKVEGSADVSVYNGSIHSTNTVKEIASDLSPKTFIFPGSMSPATPTSATCSLIPDEKFPVKSLNVDTDKTQCSDSAGLGPQSLPEDAIINLDKLDSNSINTLALLLTDLVQPEDVCSGDSSVTRNSTINKLLVLKKDISKELEKTECEIDLFETKLKSINCDGHRTNFEEGAYMSPKNDAAQHSKISVDASKPLTEISSLNNCLLLESEQAIQNYISEEHAAVIKNTNHSSGSILCNNIHIPSFKRVNTSSCNIQCNDIKSQSCDAKPQMPVVMRLMNDDMCSHELHYSLDYRNENMVGSLIVFITDMNKDAAKRASEEFHQAMPSGLPKFDISELNFFQCKKNYMHIRGNLVRNKYLLEFKVRVLALKFKALHYLWREDLNLLNLRKHRPKSNKRSETNSRASNSALQKHQSSVCSRFTLPAGNPTLVPTSEILNFTSKLLLDSQVRPYRNNLKMPAQIFDEINRRYSRFKSNNGLIENPPAIEKERVMVNPWMQEEKEVFLEMLATFGKDFKKISSFLSHKSVADCIEFYYKNHKSESFAEVKKQLKWRKQLQSRQGNMYLITSGARLNRDSNDASLDLLGAASLLAADSSGGRRNSQKQSAKPGFPDTRFSRRSNGALEKSNCEISGNEREVAAADVLAGICGALSSDALSSCITSSIDPSEKMHFTANDHSLTPEAAHTIDEEETCSDESSDEMESADWTDEEKSLFIRALSMYGKDFVKVAHFVRTRSRDQCKIFFSKARKCLSLDVINNGSANGVMPLSDVNGGRSDTEDACAAEIDSAICSTQSCSKMDVESTQSMLKTCSEGHTQTCNIVQQVDVDRPCEQCDVGASIPDEGEGKLEIKASADDEEKVIIGRGDIDVGKDHAEVGCSVSRNSESEHVYKAAEFVNAETNNENDNDKSAAGKSAVKFDGEIELKLLSTDGTSQNASCGVTVADELNKVNSNMSVGQQNSVIEESNAHVKIDETADAGDFLFSGSKPPSNGKPCNDREQKNDECTKLPVSSRFQHNVPLELLCPLQKGPETEIVQPKACLPPARLNCVLPDSSPIPLKEAGKEAPVAILNLQDGDKKPRPEPAGRGDCSLFPNHVDSSLHIAALPSSAKNDKYLNTNGKLFDGSLPFEISVMANNTTTQAKLSLLTELNSDNKHVGTAEVLTSRPGSSLPSRPERQSDRYFADAVSDACQSSESEDQLQRVGDLKLFGQILTHPSSQKPASSLEGNTSSSSPRRSNASATANSSSCWKDAAIFAPFRPGRNGKLHHQQPGEMPQRSYGFWDGNRIQTGFSSLPEPAAILAKYQGPLTVMPFGMPKESAAASSDFQQQLQLQPQPETESLSSHKYLENYPETQKKNGFDLLSSFQQQGRILRLGVNHRYSGRNSSVLSGDLESLMGGDAGGR

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
K04650	NCOR1, N-CoR	Thyroid hormone signaling pathway	map04919

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	76.740
SRP064423	SRR2545915	Juvenile tuber	56.700
SRP108465	SRR5643513	five period of Gastrodia elata	25.620
	SRR5643514	five period of Gastrodia elata	25.080
	SRR5643515	five period of Gastrodia elata	21.820
	SRR5643524	five period of Gastrodia elata	22.820
	SRR5643525	five period of Gastrodia elata	27.550
	SRR5643528	five period of Gastrodia elata	21.460
	SRR5643658	five period of Gastrodia elata	26.470
	SRR5643659	five period of Gastrodia elata	27.380
	SRR5643660	five period of Gastrodia elata	38.880
	SRR5643661	five period of Gastrodia elata	29.890
	SRR5643662	five period of Gastrodia elata	35.110
	SRR5643663	five period of Gastrodia elata	31.700
	SRR5643664	five period of Gastrodia elata	46.990
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	42.160
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	35.400
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	33.280
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	63.270
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	53.860
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	74.740
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	53.640
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	54.760
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	27.200
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	34.600
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	22.940
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	22.940
SRP279888	Gastro	Gastrodia elata tuber	36.94
	Juven	Juvenile tuber	54.96
	Mother_Gastro	Mother tuber of Gastrodia elata	30.04
	Mother_Juven	Mother tuber of Juvenile	47.90