Detail information of GWHGAAEX000580/evm.TU.scaffold_1.322


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG42061.00E-159Spliceosomal protein snRNP-U1A/U2B
nrgi|743782997|ref|XP_010921293.1|0PREDICTED: LOW QUALITY PROTEIN: U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Elaeis guineensis]
Swissprottr|Q8RWV8|U1165_ARATH4.00E-160U11/U12 small nuclear ribonucleoprotein 65 kDa protein
trEMBLtr|C5X1Q3|C5X1Q3_SORBI3.00E-177Putative uncharacterized protein Sb01g036600 {ECO:0000313|EMBL:EER92329.1}
TAIRAT1G092301.00E-159RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000081327414913317169+
Transcript Sequence

Network for GWHGAAEX000580

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_1421074.50E-09
PF00076.21RRM_13724451.70E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms29.600
SRR2545915Juvenile tuber33.210
SRP108465SRR5643513five period of Gastrodia elata13.020
SRR5643514five period of Gastrodia elata12.270
SRR5643515five period of Gastrodia elata11.820
SRR5643524five period of Gastrodia elata10.820
SRR5643525five period of Gastrodia elata14.310
SRR5643528five period of Gastrodia elata13.310
SRR5643658five period of Gastrodia elata14.090
SRR5643659five period of Gastrodia elata10.380
SRR5643660five period of Gastrodia elata11.030
SRR5643661five period of Gastrodia elata11.730
SRR5643662five period of Gastrodia elata11.660
SRR5643663five period of Gastrodia elata10.830
SRR5643664five period of Gastrodia elata12.340
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_117.360
SRR6049655Rhizomagastrodiae_C368-T10_good_120.160
SRR6049656Rhizomagastrodiae_C368-T07_good_116.360
SRR6049657Rhizomagastrodiae_C368-T07_good_121.650
SRR6049658Rhizomagastrodiae_C368-T04_good_123.530
SRR6049659Rhizomagastrodiae_C368-T04_good_123.470
SRR6049660Rhizomagastrodiae_C368-T01_good_119.860
SRR6049661Rhizomagastrodiae_C368-T04_good_121.470
SRR6049662Rhizomagastrodiae_C368-T01_good_114.420
SRR6049663Rhizomagastrodiae_C368-T01_good_116.040
SRR6049664Rhizomagastrodiae_C368-T10_good_115.620
SRR6049665Rhizomagastrodiae_C368-T10_good_115.620
SRP279888GastroGastrodia elata tuber 15.90
JuvenJuvenile tuber22.57
Mother_GastroMother tuber of Gastrodia elata 15.14
Mother_JuvenMother tuber of Juvenile 19.25