Detail information of GWHGAAEX000585/evm.TU.scaffold_1.333
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|307150171|ref|YP_003885555.1| | 1.00E-14 | sigma 54 interacting domain-containing protein [Cyanothece sp. PCC 7822] |
| KOG | KOG0274 | 0 | Cdc4 and related F-box and WD-40 proteins |
| nr | gi|743803520|ref|XP_010926940.1| | 0 | PREDICTED: F-box/WD-40 repeat-containing protein At5g21040 [Elaeis guineensis] |
| Swissprot | tr|Q94AD8|FBW3_ARATH | 0 | F-box/WD-40 repeat-containing protein At5g21040 |
| trEMBL | tr|M0TVT0|M0TVT0_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P33280_001} |
| TAIR | AT5G21040 | 0 | F-box protein 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000008 | 13635098 | 13637740 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000585
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00646.32 | F-box | 86 | 131 | 1.20E-05 |
| PF00400.31 | WD40 | 178 | 210 | 0.00021 |
| PF00400.31 | WD40 | 276 | 304 | 0.0013 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 36.530 |
| SRR2545915 | Juvenile tuber | 29.830 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 33.580 |
| SRR5643514 | five period of Gastrodia elata | 34.130 | |
| SRR5643515 | five period of Gastrodia elata | 31.380 | |
| SRR5643524 | five period of Gastrodia elata | 31.100 | |
| SRR5643525 | five period of Gastrodia elata | 41.360 | |
| SRR5643528 | five period of Gastrodia elata | 38.670 | |
| SRR5643658 | five period of Gastrodia elata | 41.110 | |
| SRR5643659 | five period of Gastrodia elata | 34.050 | |
| SRR5643660 | five period of Gastrodia elata | 30.170 | |
| SRR5643661 | five period of Gastrodia elata | 30.360 | |
| SRR5643662 | five period of Gastrodia elata | 36.140 | |
| SRR5643663 | five period of Gastrodia elata | 36.580 | |
| SRR5643664 | five period of Gastrodia elata | 31.490 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.690 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 14.190 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 18.770 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 19.580 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.940 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.930 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.980 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.340 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 10.670 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.340 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 23.410 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 23.410 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 13.22 |
| Juven | Juvenile tuber | 30.57 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 19.36 | |
| Mother_Juven | Mother tuber of Juvenile | 30.30 |