Gene detail

Detail information of GWHGAAEX000593/evm.TU.scaffold_1.344

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672179804\|ref\|XP_008810076.1\|	0	PREDICTED: uncharacterized protein LOC103721588 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|F4J738\|SAD2H_ARATH	2.00E-14	Importin beta-like SAD2 homolog {ECO:0000305}
trEMBL	tr\|W5ETJ6\|W5ETJ6_WHEAT	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Traes_4DS_E76A06452.1}
TAIR	AT3G17340	2.00E-116	ARM repeat superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000008	13969491	14000914	-

Transcript Sequence
>GWHTAAEX000593 TCCTCTGATTCTATCGCATAATGTGCTCTAACCCTAACCCCCGATATCGTCACACACACAGAAGAAAGAGCGCTAAGCCCAACCTGTAGTTCCGCTAACGTCAATTCCTGAACTGGCGAACCGAATTCACTTTCGTAACCATACTTCCTAACTTCCTACAGCTCACACGTGTCCAGTCCAGCGGCGCAAACGAACGTGAGCTGCTATACCGAATCCCCCTAGGCCAGCGGGGACCGAGTGGTAAGGCCATGATCGAAGTGTCATGGCTGCTCCACTCCGTGCTCTTTAATATTAATACACTTCACCCTTTTTGCTAAAATTAGGGTTTTGGAGCTACTGCATCATCTTTGAAGAAGGGATAATGGAATCTTTAATTCCTGAAATCTCACTTCTTCTCCACGACACTATCAGCCAGGATAAAACCCTGGTTTCCGCCGCAACGGAGCGCCTCGATCGCCTCTCATTTGATCCCGACTTCCTCCTTTCCCTCATGGCCATCCTCAAAGTCGGCAATTATCAAGGCTTGAAGGTTGCTGCGGCCGTGTATTTTAAGAACTTTATTAGACGCCACGAGGAGAAAATTCGGGCTTCTTCCGGGCAATACACTGAGTTCCGGAACCAGTTAGCCCAGACTTTGCTTCAAGCGGATCGTTCAGTTCTTAAAATTTTGGTGGATGCTTTTTATGTGATCATCATCAATGATGTTGTCAAGGAGAACAGTTGGCCTGAACTTATCCCTGAACTTAAATCAGCGATTCAGAGCAGTATACTTATTAGTCAAATCCCGTACTCTCAGTGGAGCACAATTAATGCTCTTATTGTCCTGCAAACAATCATTAGACCTTTTCAGTACTTCTTGAATCCTAAAGTTCCAAGGGAACCTGTACCATCCCAATTGGAGCTAATTGCTGAAGACATTCTAGTTCCTTTACAAACAACATTCCATTTCTTTGTTAACAAGGCTTTATCATGTCCAGATAGAGTAGACATGGAAACTGAAGAGGTTCTTCTTACGATCTGCAAGTGCATTTACTTAAGTGTGAGGTCATATATGCCGTCAGCATTAAGATTGGCTCTGGCAACTTTTTGTAGTGACTGGTTTAGGATCCTGGATTCGCTGAGCTTAGGTAGTACTTTATCTGGTGAAGGACAGTTGCTGCGGTTGAAGACTTGTAGGAGAATTCTTGTCATCCTGTGTGCTTTGGTCACTCGCCATAGAAAGCATTGTGACAAGTATATGCCCAATATCATTAAATGTGCTATCAAAATAGTCGAGCAGAATGCCAATATCAATATGTTGGATGGTCTGCCAGAGCGGATTGTTTTACTGGCCTTTGATGTAATTTCACGTGTACTTGAAACGGGTCCTGGGTGGAAACTGGTATCGCCACATTTTTCTTCTCTTTTGGACCTGGCAATCTTCCCTGCATTAGCATTAAATCAAAAAGATATGATGGAGTGGGATAAAGATGCTGAAGAATACACAAGGAAGAATTTACCATCTGATCTCGATGACATTTCAGGGTCGACTGAGGATCTGTTTACTGCAAGAAGAAGCGCTATTAATTTACTTTCTATAATTGCAATGTCGAAGGGCCCATCTGTTGTATCTGCTTCTAAACACAATAAACGAGGCAGAAATAAAAGAAAGGAGTGTCACAATTCTGTTGGAGAGCTGTTTGTGGTACCTTTCCTATCAAAGTTTCCCATACCCTGTGGTTTAGAGCCGCCCTCATCAAAAATTTTGCAAGACTACTACGGTGTTTTGATGGCATATGGAGGTCTCCAAGACTTCATTAAGGGCAGAAGTTCTGAATACACATATACGTTGCTTCAGCATCGGATACTTCCAATTTTTTCTTTGTACCATTGTTCTCCATTTTTGTTTTCGACTGCCTGCTGGGTACTTGGAAAGCTTTCTTGCTGCCTTCCTCAGGCTATGAGTGCAAGTATCTATGAATCATTAACTAAGGCATTGAGTTTGCCTGATGGTAAAGATTTCAATTTTTATCCTGTTCATGCTTCTGCTGCTGGAGCCATTATTGAACTTATCAACGATGAATACTTTCCACCTGACTGGTTACCCCTCTTGCAAGTTCTTGTTAACAGAATGGACCTTGCAGATGAAAATGAATCCCGTCTCTTTTTAAATCTTCTTGGCACTGTGGTTGAGGCTGGCCAGGAGAATGTTGCTGTCCACATTCCTTTAGTTGTCTCCAATATAGTTGGAGTTATTTTAAAGCGCATGCCTCCTATTCCAGAACCTTGGCCTCAGGCACTTCAACATGGGTTTGCTGCACTGGCTAAAGTAGCACAGATTTGGGAAAGTTCTCTGCCAGATAATATCCATTGCTCAGAAAATGTAGAATGGAGATCTGCTTGGGCATCCATTACTAAGTTGTTCTCTAAGTTATTACAACAGGCTTGGGTTATGCCTATTAAGAATGCGGCTGGCCAAAATCTTCGTGTTTCTGGAACATTACCACCCTCCTCATGCATTGATGATGCCTCCACATTGCTTGGCTTTGTCATGCGGTTCATTACCACAAAGGATGAATTGACAAGCTTGAAGATCACTGATTTATTGGCTGTGTGGTCTGCTCTTATTGCTGATTGGGATTCATGGGATGAGATGGAGGACCAAGCAATCTTCAATTCTATCCGGGAAGCTGTGAATTTGCAACATAAATGTGATCTTCTCTTTCTGTTTACCCATAGAGCACCATCAGCAAATTCCTCCCCTGATTCAAAGCTATCAATTTTTGAAGGCATTTGCAGTTTTGTCAGTGAAGCTATTAAAGCATATCCGTCAGCAACTTGGCGGGCTTGCTCGTGTATACACGCACTGCTGCACGTGCCGAGTTTTTTGTGTGATTCTAAAGCTGTAAAGAATGCTGTGGCGATAACCTTCACAAGAGTAGCATTTTCCCGTTTCAGAGACATTCACAAAAAACCTAATGGGCTCTGGAAACCCCTTATATTGGTTATATCTTCATGCTATATTTTATATCCTGAAGATATTGAACAAGTTCTTGAGAAAGAGGAGGATGAGGGCTTTGTAATTTGGGCAAGCACACTTGCACGCATCTCTACAAGCTCGTCCACCCACGGTCTGACATCCGAGTCTGAGATAGTATTATCTGTTGCAACACTAACGAAAGCGGTGGAGAGGCTGCTTATATCGCTGTTAGATAGAGGCGAAGTTTTGAGGGCCTGTTTTATGGCTCTTCTTGATTCATTTAATCATTTGAAAGAAGTTCAGGAGGAAAATGTAAAGGATGAAGATTCTGATGAGGAAAGTGATGGCCATGAGGATGTTGAAGAAGAGGATGATGATGATGATGAGGATTCTGAGGATGAACAACCTGAAGAAACTGAAGAAGAATTTTTGAATCGGTATGCGAAAGCAGCTGCTGAGCTGGAGAATGAGATGATTGAAGAAGGTGATGTTGAGGATGATGACCAAGAGATTGATTTGGGTGTGTTTGAAGAAATGAATGTGGAGAAATCAGTGCTGGGGCTGCTGGAGAGGCACGGCCGACAATTGATGCAAGGCCAGGCATTGTCGCCGGGCCTCGAGCATGCGCTTGCCAATCGTTTTCCTCAGCACGCCCATCTTTTCCACTCCTTAATTTTTTGATAATTATAAATGTTATTTTCCCATTTATTTATGCATTTTTCACAAATTTCTCTGCATTATTTCTATTATGTATTCTTAAATTTTTATTATTTAAGAAGATTCTGTTGAGTTATTATATTCTTAAATAAAAAATCC

Network for GWHGAAEX000593

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03810.18	IBN_N	26	94	3.30E-08

Protein Sequence

>GWHPAAEX000593
MESLIPEISLLLHDTISQDKTLVSAATERLDRLSFDPDFLLSLMAILKVGNYQGLKVAAAVYFKNFIRRHEEKIRASSGQYTEFRNQLAQTLLQADRSVLKILVDAFYVIIINDVVKENSWPELIPELKSAIQSSILISQIPYSQWSTINALIVLQTIIRPFQYFLNPKVPREPVPSQLELIAEDILVPLQTTFHFFVNKALSCPDRVDMETEEVLLTICKCIYLSVRSYMPSALRLALATFCSDWFRILDSLSLGSTLSGEGQLLRLKTCRRILVILCALVTRHRKHCDKYMPNIIKCAIKIVEQNANINMLDGLPERIVLLAFDVISRVLETGPGWKLVSPHFSSLLDLAIFPALALNQKDMMEWDKDAEEYTRKNLPSDLDDISGSTEDLFTARRSAINLLSIIAMSKGPSVVSASKHNKRGRNKRKECHNSVGELFVVPFLSKFPIPCGLEPPSSKILQDYYGVLMAYGGLQDFIKGRSSEYTYTLLQHRILPIFSLYHCSPFLFSTACWVLGKLSCCLPQAMSASIYESLTKALSLPDGKDFNFYPVHASAAGAIIELINDEYFPPDWLPLLQVLVNRMDLADENESRLFLNLLGTVVEAGQENVAVHIPLVVSNIVGVILKRMPPIPEPWPQALQHGFAALAKVAQIWESSLPDNIHCSENVEWRSAWASITKLFSKLLQQAWVMPIKNAAGQNLRVSGTLPPSSCIDDASTLLGFVMRFITTKDELTSLKITDLLAVWSALIADWDSWDEMEDQAIFNSIREAVNLQHKCDLLFLFTHRAPSANSSPDSKLSIFEGICSFVSEAIKAYPSATWRACSCIHALLHVPSFLCDSKAVKNAVAITFTRVAFSRFRDIHKKPNGLWKPLILVISSCYILYPEDIEQVLEKEEDEGFVIWASTLARISTSSSTHGLTSESEIVLSVATLTKAVERLLISLLDRGEVLRACFMALLDSFNHLKEVQEENVKDEDSDEESDGHEDVEEEDDDDDEDSEDEQPEETEEEFLNRYAKAAAELENEMIEEGDVEDDDQEIDLGVFEEMNVEKSVLGLLERHGRQLMQGQALSPGLEHALANRFPQHAHLFHSLIF

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006886	Biological Process	intracellular protein transport
GO:0008536	Molecular Function	Ran GTPase binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	27.010
SRP064423	SRR2545915	Juvenile tuber	36.890
SRP108465	SRR5643513	five period of Gastrodia elata	22.210
	SRR5643514	five period of Gastrodia elata	21.950
	SRR5643515	five period of Gastrodia elata	19.780
	SRR5643524	five period of Gastrodia elata	21.040
	SRR5643525	five period of Gastrodia elata	21.290
	SRR5643528	five period of Gastrodia elata	15.010
	SRR5643658	five period of Gastrodia elata	19.470
	SRR5643659	five period of Gastrodia elata	28.610
	SRR5643660	five period of Gastrodia elata	29.590
	SRR5643661	five period of Gastrodia elata	26.270
	SRR5643662	five period of Gastrodia elata	26.470
	SRR5643663	five period of Gastrodia elata	31.160
	SRR5643664	five period of Gastrodia elata	30.080
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	29.540
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	26.930
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	27.350
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	32.990
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	35.840
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	38.750
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	32.240
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	37.000
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	26.900
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	27.290
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	24.770
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	24.770
SRP279888	Gastro	Gastrodia elata tuber	52.83
	Juven	Juvenile tuber	37.81
	Mother_Gastro	Mother tuber of Gastrodia elata	27.02
	Mother_Juven	Mother tuber of Juvenile	29.04