Detail information of GWHGAAEX000599/evm.TU.scaffold_1.352
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|159899987|ref|YP_001546234.1| | 2.00E-139 | acyl-CoA dehydrogenase [Herpetosiphon aurantiacus DSM 785] |
| KOG | KOG0138 | 0 | Glutaryl-CoA dehydrogenase |
| nr | gi|672110002|ref|XP_008793066.1| | 0 | PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal [Phoenix dactylifera] |
| Swissprot | tr|Q96329|ACOX4_ARATH | 0 | Acyl-coenzyme A oxidase 4, peroxisomal |
| trEMBL | tr|M0TSB6|M0TSB6_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P21130_001} |
| TAIR | AT3G51840 | 0 | acyl-CoA oxidase 4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000008 | 14160157 | 14185054 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000599
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02771.15 | Acyl-CoA_dh_N | 65 | 173 | 7.80E-21 |
| PF02770.18 | Acyl-CoA_dh_M | 180 | 272 | 1.20E-21 |
| PF00441.23 | Acyl-CoA_dh_1 | 290 | 430 | 3.00E-25 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0050660 | Molecular Function | flavin adenine dinucleotide binding |
| GO:0016627 | Molecular Function | oxidoreductase activity, acting on the CH-CH group of donors |
| GO:0003995 | Molecular Function | acyl-CoA dehydrogenase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 142.790 |
| SRR2545915 | Juvenile tuber | 167.530 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 93.990 |
| SRR5643514 | five period of Gastrodia elata | 102.180 | |
| SRR5643515 | five period of Gastrodia elata | 88.270 | |
| SRR5643524 | five period of Gastrodia elata | 95.540 | |
| SRR5643525 | five period of Gastrodia elata | 77.770 | |
| SRR5643528 | five period of Gastrodia elata | 82.700 | |
| SRR5643658 | five period of Gastrodia elata | 71.810 | |
| SRR5643659 | five period of Gastrodia elata | 86.400 | |
| SRR5643660 | five period of Gastrodia elata | 90.060 | |
| SRR5643661 | five period of Gastrodia elata | 96.600 | |
| SRR5643662 | five period of Gastrodia elata | 86.050 | |
| SRR5643663 | five period of Gastrodia elata | 87.840 | |
| SRR5643664 | five period of Gastrodia elata | 96.580 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 116.690 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 125.550 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 101.020 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 124.630 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 110.390 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 102.720 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 99.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 93.670 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 92.770 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 80.600 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 125.090 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 125.090 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 76.57 |
| Juven | Juvenile tuber | 84.42 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 82.62 | |
| Mother_Juven | Mother tuber of Juvenile | 78.30 |