Detail information of GWHGAAEX000601/evm.TU.scaffold_1.354
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|109898539|ref|YP_661794.1| | 4.00E-07 | adenosine deaminase [Pseudoalteromonas atlantica T6c] |
| KOG | KOG1096 | 0 | Adenosine monophosphate deaminase |
| nr | gi|743781207|ref|XP_010920819.1| | 0 | PREDICTED: probable AMP deaminase [Elaeis guineensis] |
| Swissprot | tr|O80452|AMPD_ARATH | 0 | AMP deaminase |
| trEMBL | tr|M5WJ78|M5WJ78_PRUPE | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMJ09288.1} |
| TAIR | AT2G38280 | 0 | AMP deaminase, putative / myoadenylate deaminase, putative |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000008 | 14187793 | 14251874 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000601
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00962.21 | A_deaminase | 381 | 787 | 4.10E-126 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01490 | AMPD | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Biosynthesis of antibiotics | map01130 | ||
| Purine metabolism | map00230 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0032264 | Biological Process | IMP salvage |
| GO:0009168 | Biological Process | purine ribonucleoside monophosphate biosynthetic process |
| GO:0003876 | Molecular Function | AMP deaminase activity |
| GO:0019239 | Molecular Function | deaminase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 47.220 |
| SRR2545915 | Juvenile tuber | 46.490 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 23.760 |
| SRR5643514 | five period of Gastrodia elata | 19.370 | |
| SRR5643515 | five period of Gastrodia elata | 20.320 | |
| SRR5643524 | five period of Gastrodia elata | 19.560 | |
| SRR5643525 | five period of Gastrodia elata | 15.730 | |
| SRR5643528 | five period of Gastrodia elata | 16.060 | |
| SRR5643658 | five period of Gastrodia elata | 23.330 | |
| SRR5643659 | five period of Gastrodia elata | 26.380 | |
| SRR5643660 | five period of Gastrodia elata | 28.570 | |
| SRR5643661 | five period of Gastrodia elata | 25.290 | |
| SRR5643662 | five period of Gastrodia elata | 22.250 | |
| SRR5643663 | five period of Gastrodia elata | 27.010 | |
| SRR5643664 | five period of Gastrodia elata | 27.510 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 38.120 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 28.060 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 29.160 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 46.540 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 46.010 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 53.010 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 42.600 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 39.550 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 32.200 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 34.540 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 20.720 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 20.720 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 26.98 |
| Juven | Juvenile tuber | 55.83 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 22.02 | |
| Mother_Juven | Mother tuber of Juvenile | 38.86 |