Detail information of GWHGAAEX000605/evm.TU.scaffold_1.358


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41972.00E-132FOG: PPR repeat
nrgi|743863126|ref|XP_010943720.1|0PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic-like [Elaeis guineensis]
Swissprottr|Q9LFI1|PP280_ARATH5.00E-133Pentatricopeptide repeat-containing protein At3g53360, mitochondrial (Precursor)
trEMBLtr|A0A061FQ62|A0A061FQ62_THECC0Pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:EOY19053.1}
trEMBLtr|A0A061FQ62|A0A061FQ62_THECC2.00E-16Pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:EOY19053.1}
TAIRAT3G533602.00E-132Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000081440733514410482-
Transcript Sequence

Network for GWHGAAEX000605

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13041.5PPR_2651125.40E-09
PF01535.19PPR1411630.0089
PF01535.19PPR1691991.30E-06
PF01535.19PPR2712940.88
PF01535.19PPR3433690.29
PF01535.19PPR3713970.0017
PF01535.19PPR4444640.99
PF13041.5PPR_24695189.00E-13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms4.010
SRR2545915Juvenile tuber4.510
SRP108465SRR5643513five period of Gastrodia elata7.820
SRR5643514five period of Gastrodia elata8.840
SRR5643515five period of Gastrodia elata9.070
SRR5643524five period of Gastrodia elata9.250
SRR5643525five period of Gastrodia elata10.090
SRR5643528five period of Gastrodia elata7.600
SRR5643658five period of Gastrodia elata10.420
SRR5643659five period of Gastrodia elata8.260
SRR5643660five period of Gastrodia elata7.010
SRR5643661five period of Gastrodia elata7.680
SRR5643662five period of Gastrodia elata9.600
SRR5643663five period of Gastrodia elata9.330
SRR5643664five period of Gastrodia elata8.610
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_18.670
SRR6049655Rhizomagastrodiae_C368-T10_good_16.260
SRR6049656Rhizomagastrodiae_C368-T07_good_19.260
SRR6049657Rhizomagastrodiae_C368-T07_good_19.020
SRR6049658Rhizomagastrodiae_C368-T04_good_18.910
SRR6049659Rhizomagastrodiae_C368-T04_good_19.650
SRR6049660Rhizomagastrodiae_C368-T01_good_19.230
SRR6049661Rhizomagastrodiae_C368-T04_good_18.610
SRR6049662Rhizomagastrodiae_C368-T01_good_19.900
SRR6049663Rhizomagastrodiae_C368-T01_good_110.360
SRR6049664Rhizomagastrodiae_C368-T10_good_16.660
SRR6049665Rhizomagastrodiae_C368-T10_good_16.660
SRP279888GastroGastrodia elata tuber 12.34
JuvenJuvenile tuber8.14
Mother_GastroMother tuber of Gastrodia elata 23.93
Mother_JuvenMother tuber of Juvenile 20.92