Gene detail

Detail information of GWHGAAEX000610/evm.TU.scaffold_1.375

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|74317003\|ref\|YP_314743.1\|	1.00E-08	hypothetical protein Tbd_0985 [Thiobacillus denitrificans ATCC 25259]
KOG	KOG2720	0	Predicted hydrolase (HIT family)
nr	gi\|743887935\|ref\|XP_010910502.1\|	0	PREDICTED: GDP-L-galactose phosphorylase 2-like isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q8RWE8\|GGAP1_ARATH	0	GDP-L-galactose phosphorylase 1
trEMBL	tr\|M0RH59\|M0RH59_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P10830_001}
TAIR	AT4G26850	0	mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000008	15420742	15424305	-

Transcript Sequence
>GWHTAAEX000610 ATTTGATCTCCTCTCCTCTTCGGCAAATTTCAGAAGAAAGAAAGTGAGAGAGAGAGAGATATCATGATTGAGAGCTCACAGAGGAGATCCTGGAGTTATCTCGTGTCTAACTAATCACGGCTGTTTTTCGATCCTTCGGGCGGGCCTTCAACCGCCTCCATCCTCGTCTGTCGCAAGTGGAGAACCTTTCTGAGAAGAAGCGGGCCGTGGGGCTTCTCGCCCTCGACAAGCATCGCTGCCCTTCCCCGCACGGCGGCCGCGGTGCCCTTCCTTCTGAAGGCGGCAGCCCATCCGACCTTCTCTTCCTTGCTGGCGGCGGCCCTCACTACCCCTCTCTTAATTTCTTCTTCTAACGCTCCAAGATGCTCACCATCAAAAGGGTTCCGACCGTCCTCTCTAATTACCAGGAGGACGCTCTTGGATGCGGTCGCAACTGCCTTGGGAATTGCTGCCTTCCTGTCTCCAACCTTCCTCTTTATTCCTTCAGAAGTGATAAGGCGCGTGCTGTGGCTTCTCCTGCGCAGGGAGATCTCCCATCTGATTTCTTGCTGAACACTCTTTTACTCGGACAGTGGGAGGATCGCATGAGTAGGGGATTGTTCAAGTATGATGTTACAGCTTGCCAATCGAAGGTGATACCCGGGAGGCTTGGATTTATAGCCCAAATCAATGAAGGGCGCCACCTGCAGAAGAGGCCAACGGAGTTCAGGGTTGATCAGGTGCTTCAACCTTTTGATCCAGCCAAGTTTAACTTTACTAAGGTTGGACAAGAAGAGGTATTGTTCCGATTTGAAATCGGTGAAGATGATTCTGCCTGCTTCTCTGAGAGTGCTTCTGTTGAAAAGGGTGTTTGTCCAAATGTTGTTGCCATTAATGTGAGCCCCATTGAGTATGGACATATTCTTCTGATCCCGCGTGTGCTTGAGTGCTTGCCTCAGATGATTGATCCAGAAACATTTCTGCTTGCAGTTCACATGGCAGCTGAAGCAGGAAATCCTTACTTCAGGCTTGGTTATAACAGTTTGGGTGCCTTTGCCACCATAAATCACTTGCACTTTCAGGCCTATTACTTGACGATGCCTTTTCCTGTGGAGAAGGCTCCAACTGAGAAGATTGATATTGTTCAAGGCATAGTAAAGAGTGGCGTCAAGATTTCTAGCCTGCTGTATTACCCGGTGAGGGGTCTAGTTTATGAGGGCGGAAATAGCCTTAAAGACTTGGCTGATGCGGTTGCTAAAGCCTGCGGTTATCTTCAAGAAAATAACATCCCATTTAATGTGCTTATTTCCGACTGTGGTGGGAGAATCTTTTTATTCCCTCAGTGCTATGCTGAGAAGCAGGCGCTCGGGGAAGTGAGCCAGGAGCTTTTGGAAACGAATGTGAACCCTGCTGTTTGGGAGATCAGCGGCCACATGGTGCTTAAACGGAAAAAGGATTACGACCAGGCATCTGAGGAATATGCTTGGAAGCTCTTAGCTGAAGTCTCCCTTTCCGAGGAAAGATTCGAAGAGGTGAAATCCTGTATTATGTTGGCCACTGGTATGGTTGAGTCTGAGAAGGACGCAAATGCGAATGAAAAAGATGAAGAAGAAGAAGCATCTTTCCAGCTCACAGCGGCCATGCAGACTCTTTCAGAAAGCTGCTTGGTTCTGCAGTGAAGAAGCTTTCTGGCTTGTAGATCCTGTTTGATGTAGTTGTTGAATGCTCTACCTTTTGGGTCTATTTTATGTTTAAGACTTGTGGCTTTAATAAGAGCTCTCTTCCTCAGAATATTTTGATCTATGTTTAAATACAGTTGCAACCCCGAAGAGAGTAGCTTGTGACGAAGCAGCAGCTAAGTTCTGACTCCATGGCTTTAGTTCATTTATCTTGCTTTTGCTTAAGATCTAGTGATCTTTGTCCAAGTGATGATTTTAGGAAACAGATCCTAAGCATTAAATTCAACTCAGGAAAAAAGCCAAATGCCTACTCAGGTATTTCTTTGTTCTTGTGCCATTTTTGCTGTCAAACCATACTATAACGTCACAATGTTGTTAGGCTAGATAATCAAGCTATTATAATCAAGAGCTAATCCTTTTTTTTATAATTTTCTCAAATAGGTTAGATTAAGCGACGTAGACTTAAAACTGTA

Network for GWHGAAEX000610

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14190	VTC2_5	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Ascorbate and aldarate metabolism	map00053

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	33.350
SRP064423	SRR2545915	Juvenile tuber	45.710
SRP108465	SRR5643513	five period of Gastrodia elata	63.760
	SRR5643514	five period of Gastrodia elata	61.240
	SRR5643515	five period of Gastrodia elata	71.320
	SRR5643524	five period of Gastrodia elata	98.450
	SRR5643525	five period of Gastrodia elata	45.120
	SRR5643528	five period of Gastrodia elata	69.840
	SRR5643658	five period of Gastrodia elata	60.590
	SRR5643659	five period of Gastrodia elata	40.350
	SRR5643660	five period of Gastrodia elata	38.030
	SRR5643661	five period of Gastrodia elata	36.300
	SRR5643662	five period of Gastrodia elata	48.950
	SRR5643663	five period of Gastrodia elata	45.750
	SRR5643664	five period of Gastrodia elata	31.810
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	74.980
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	73.280
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	92.480
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	64.330
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	62.480
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	53.020
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	55.940
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	78.700
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	109.250
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	89.450
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	105.770
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	105.770
SRP279888	Gastro	Gastrodia elata tuber	31.54
	Juven	Juvenile tuber	30.73
	Mother_Gastro	Mother tuber of Gastrodia elata	213.25
	Mother_Juven	Mother tuber of Juvenile	155.84