Detail information of GWHGAAEX000613/evm.TU.scaffold_1.378
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|390944042|ref|YP_006407803.1| | 3.00E-63 | pectin methylesterase [Belliella baltica DSM 15883] |
| nr | gi|695063518|ref|XP_009420266.1| | 0 | PREDICTED: probable pectinesterase/pectinesterase inhibitor 51 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9LXD9|PME51_ARATH | 0 | Pectinesterase 51 (Precursor) |
| trEMBL | tr|M0RFC9|M0RFC9_MUSAM | 0 | Pectinesterase {ECO:0000256|RuleBase:RU000589} |
| TAIR | AT5G09760 | 0 | Plant invertase/pectin methylesterase inhibitor superfamily |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000008 | 15567465 | 15571350 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000613
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04043.14 | PMEI | 27 | 168 | 3.40E-14 |
| PF01095.18 | Pectinesterase | 214 | 517 | 4.20E-114 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE8 |
| Carbohydrate-Active enzymes Family | CE8 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0042545 | Biological Process | cell wall modification |
| GO:0030599 | Molecular Function | pectinesterase activity |
| GO:0004857 | Molecular Function | enzyme inhibitor activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.390 |
| SRR2545915 | Juvenile tuber | 2.700 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.550 |
| SRR5643514 | five period of Gastrodia elata | 4.750 | |
| SRR5643515 | five period of Gastrodia elata | 4.640 | |
| SRR5643524 | five period of Gastrodia elata | 3.160 | |
| SRR5643525 | five period of Gastrodia elata | 10.990 | |
| SRR5643528 | five period of Gastrodia elata | 4.890 | |
| SRR5643658 | five period of Gastrodia elata | 12.100 | |
| SRR5643659 | five period of Gastrodia elata | 2.060 | |
| SRR5643660 | five period of Gastrodia elata | 1.700 | |
| SRR5643661 | five period of Gastrodia elata | 2.550 | |
| SRR5643662 | five period of Gastrodia elata | 0.850 | |
| SRR5643663 | five period of Gastrodia elata | 1.570 | |
| SRR5643664 | five period of Gastrodia elata | 0.860 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.940 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.140 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 9.370 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.780 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.400 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.150 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.830 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.320 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.870 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.530 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 15.190 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 15.190 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.98 |
| Juven | Juvenile tuber | 3.93 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.38 | |
| Mother_Juven | Mother tuber of Juvenile | 0.81 |