Gene detail

Detail information of GWHGAAEX000614/evm.TU.scaffold_1.379

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|116253715\|ref\|YP_769553.1\|	5.00E-24	glycosyl transferase (sulfolipid biosynthesis) protein [Rhizobium leguminosarum bv. viciae 3841]
KOG	KOG1950	0	Glycosyl transferase, family 8 - glycogenin
nr	gi\|695011662\|ref\|XP_009392557.1\|	0	PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 isoform X2 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9LSB1\|GUX1_ARATH	0	UDP-glucuronate:xylan alpha-glucuronosyltransferase 1
trEMBL	tr\|R7WFW3\|R7WFW3_AEGTA	0	Glycogenin-1 {ECO:0000313\|EMBL:EMT19434.1}
TAIR	AT3G18660	0	plant glycogenin-like starch initiation protein 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000008	15574053	15580478	-

Transcript Sequence
>GWHTAAEX000614 TGAAGGAAAAGGAGCAATGGGAAGTGCGTCAAATATTTTTTCTGAAGGTGAATGAGATTTCGTGCAAGTAGCTATCTCATTCAAGACTATTACCTAAGTGTAATGGCAGGTGATGCGCAAAGCATATGAAGAGGGAGTAAGAAAACAAAACTTTATATTAAAGGGTGCAATTAACAAATAAACATTTGTTATTCATAATTTGCAAACAAATATGAGCTTTTTTCCACCCTTTAATGCTTCTTCATTATCCATTTGATCCCAAGTTTGTTTGAAGTTAAATTATTCTCTAGTTCTTGATAGACTCCAGGTACTAGCACATTACCTCTTCAAAAGTTAGATTATGCTTGAGGAACATTGATGAATTTGAATCATTTGGGGCTGTTTGGTTGCAATGTGCGTTTTGGCTCTATATTTTTTGGATGTAATTTATTTTATTATAATATGTTTAGGTAAAACTATCCCCTTTATTTAATATGATTTTTCTATATTTTCTTTATTTTAATATTTGATAATGCCGTCGAACAAAAATGAAAAGCCATGGATGAAGAGAGCGCCGGCGCGAGCTTTTCTCCCGACGATGCACTTCTCATGTGATAATCGCTAGCGAAGACGCATTTCTCGTGCGATAATTGTCGACACAAACCCTAATATCACTAAAATTGCCAGCGCAATGAATTGTTATCCCAATATCGCCAGTTTGGGCTGTTATTTAGATAGCTAGTAAATTTGAAGAACATCAAGATAACATGTGTTTGGTTCAATTATTAAAAGACAACATAGCATCAAGATGCCTACGAACTAAACAGCCCCTTGATATAATGCGCATGGATCACCAATCTTATGATTGAAGGTGACACATGAATTGCTAACATTAATAAAGTATATTATTTGTTTCCATGGAATATTATTCTCACATTACTTCTTTCTTTAGTTATACTATCTTCTAAGGTTTGTTGGTTATAATATTTCCAGCACATGCATGACCCTATTCATTTTTCTGAAAATTTGTTCAGAACAAATACAAGCCACAGAAGAACTCAGAAAAGTGTTGGCCTCAAAGATACAGCAAAACCGATCAATCCAGCAGGCCAAGAAAGGGATTCCAGCAGTAATCATCGTTGGCTGAGGTGCCTCATTGCATTTTTTGTATTTGGAATCATCTTATTGAAAGTTATTCAGTCTTCTCCATGGAAGTGCAGTAATGCAAAATCATCAAGCAACCTTGCTCGGTCATGTTTTACAAACGCTGGGTGGGGGAAGTGGAGAAGGGGGGTTCCCGATCAAAGATACACATCAAACTCACACATTCAATGGGCTCAAATACTCCAAATCACATCAAAGCTAGATGCAGAGAAAAAAGCTCTCAACATCGGATTGCTAAACTTCAACAGCACTGAGATCAAACAATGGAAAAACCTCTTTCCAACAGCAGAATTCTCAAAAATTCATCTTAAAAAAGCAGGCAAAGAACTTACCTGGAATGATGACCTCTATCCCGAATGGATTAATGAGGAAAAAGAAGAAGAATTTGATTTTCCCTCTTGCCCCAATCTCCCGGATCCGGAGATTCCAAAAAGTTTACAGCTTGGCCTTGTGGCCGTCAAACTTCCATGCGATAAGACCTCCAACTGGACAAGAGATATACCTCGGCTGCATTTGCAGCTTGCGGCAGCTAAACTCTCTGTGCATTCTAAGGAAGGAAATGATGACCCAGCGCATGTGCTTGTTGTCACAGATTGCCTTCCGATACCAAACCTATTCTCATGCAAGAATCTGGTTGAAAGAAAGGAGAACATTTGGTTATACGAGCCTGACTCGCAAGTTTTAAAGCAGAAACTTCAGTTTCCAACAGGATCATGCAAACTGTCTCTAACACTTAAACATGAAGTGAAAGCATCATCAATTAAGGCCAGCCGAGAAGCATATGCTACAATTCTCCACTCCGAAGAAGATTATGTCTGTGGAGCAATTGCTGCAGCTCAAAGCATACGCTTAACTGGTTCGACCAGGGATCTTGTTATCCTTGTTGATGAAACAATCAGTACCGATTACAAAATTGGCCTTGAAGCAGCGGGATGGAAGATTAAAAAGATTAAGAGGATAAGAAATCCTAAAGCCTCAAAAGATGCTTACAATGAGTGGAATTACAGCAAGTTCCGCCTATGGCAGCTTACTGAATATGATAAAATAATATTCATTGATTCCGACCTTCTTGTCCTGAGAAATATTGATTTCCTTTTCACCATGCCCGAGATCAGCGCAACAGGCAACAACGGAACTCTCTTCAACTCCGGTGTGATGGTTATAGAGCCTTCAAACTGCACATTTAAGTTGTTAATTGAGCACATTAATGACATAAAATCCTACAATGGCGGCGACCAGGGATACTTGAATGAAATATTTACATGGTGGCACAGAATTCCAAGGCACATGAACTTCTTGAAGCATTTCTGGATTGGTGATGAAGAAGAGAAGAAGGCCAAGAAAACACATTTATTTGGTGCCGAGCCTCCTGTTCTGTATGTGCTTCACTACTTGGGATTCAAGCCATGGCTATGTTTTCGGGACTACGATTGCAACTGGAATGTGAACTTCATGCAGGAATTTGCCAGTGATGTTGCTCATCAGAAGTGGTGGAGAGTGCATGATTCAATGCCGAAGAGACTGCAGAAATTCTGTCTTTTGAGTACACAAAGGAAGGCGAATTTGGAGTGGGAACGAAGGCAAGCAGAGAAAGCTGACTATTCAGATGGTCATTGGAAGAGGAATGTGACTGACGCAAGGCTAAGAATCTGTAAAGATGATTATTGTGACTGGAAGAGCATGTTATTGCACTGGGGAGATCCTTGA

Network for GWHGAAEX000614

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01501.19	Glyco_transf_8	320	527	7.10E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016757	Molecular Function	transferase activity, transferring glycosyl groups

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.060
SRP064423	SRR2545915	Juvenile tuber	2.230
SRP108465	SRR5643513	five period of Gastrodia elata	0.750
	SRR5643514	five period of Gastrodia elata	1.070
	SRR5643515	five period of Gastrodia elata	0.840
	SRR5643524	five period of Gastrodia elata	1.040
	SRR5643525	five period of Gastrodia elata	25.480
	SRR5643528	five period of Gastrodia elata	13.640
	SRR5643658	five period of Gastrodia elata	50.240
	SRR5643659	five period of Gastrodia elata	0.790
	SRR5643660	five period of Gastrodia elata	0.500
	SRR5643661	five period of Gastrodia elata	0.730
	SRR5643662	five period of Gastrodia elata	0.280
	SRR5643663	five period of Gastrodia elata	0.950
	SRR5643664	five period of Gastrodia elata	0.370
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.810
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.630
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.160
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.180
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.270
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.420
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.810
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.110
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	1.880
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.380
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.480
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.480
SRP279888	Gastro	Gastrodia elata tuber	0.59
	Juven	Juvenile tuber	1.20
	Mother_Gastro	Mother tuber of Gastrodia elata	0.09
	Mother_Juven	Mother tuber of Juvenile	0.62