Detail information of GWHGAAEX000617/evm.TU.scaffold_1.384
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2494 | 1.00E-20 | C3H1-type Zn-finger protein |
| nr | gi|672126171|ref|XP_008786525.1| | 9.55E-83 | PREDICTED: zinc finger CCCH domain-containing protein 28-like [Phoenix dactylifera] |
| Swissprot | tr|Q0JD07|C3H28_ORYSJ | 8.00E-72 | Zinc finger CCCH domain-containing protein 28 |
| trEMBL | tr|Q01K82|Q01K82_ORYSA | 1.00E-71 | H0525C06.2 protein {ECO:0000313|EMBL:CAH66839.1} |
| trEMBL | tr|Q01K82|Q01K82_ORYSA | 4.00E-47 | H0525C06.2 protein {ECO:0000313|EMBL:CAH66839.1} |
| trEMBL | tr|Q01K82|Q01K82_ORYSA | 6.00E-29 | H0525C06.2 protein {ECO:0000313|EMBL:CAH66839.1} |
| TAIR | HS10518340 | 1.00E-20 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000008 | 15735384 | 15812748 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000617
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14608.5 | zf-CCCH_2 | 51 | 71 | 0.2 |
| PF14608.5 | zf-CCCH_2 | 161 | 181 | 0.062 |
| PF14608.5 | zf-CCCH_2 | 237 | 254 | 1.4 |
| PF14608.5 | zf-CCCH_2 | 265 | 282 | 0.0034 |
| PF14608.5 | zf-CCCH_2 | 317 | 334 | 0.38 |
| PF14608.5 | zf-CCCH_2 | 377 | 394 | 3 |
| PF14608.5 | zf-CCCH_2 | 429 | 447 | 0.063 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C3H |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0046872 | Molecular Function | metal ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 16.220 |
| SRR2545915 | Juvenile tuber | 12.300 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.820 |
| SRR5643514 | five period of Gastrodia elata | 9.750 | |
| SRR5643515 | five period of Gastrodia elata | 10.570 | |
| SRR5643524 | five period of Gastrodia elata | 9.080 | |
| SRR5643525 | five period of Gastrodia elata | 8.480 | |
| SRR5643528 | five period of Gastrodia elata | 6.330 | |
| SRR5643658 | five period of Gastrodia elata | 7.990 | |
| SRR5643659 | five period of Gastrodia elata | 7.890 | |
| SRR5643660 | five period of Gastrodia elata | 7.330 | |
| SRR5643661 | five period of Gastrodia elata | 8.380 | |
| SRR5643662 | five period of Gastrodia elata | 7.810 | |
| SRR5643663 | five period of Gastrodia elata | 7.650 | |
| SRR5643664 | five period of Gastrodia elata | 9.030 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.990 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 19.460 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 14.320 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 18.440 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.230 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 19.300 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 16.380 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.510 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.620 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.440 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 12.490 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 12.490 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.72 |
| Juven | Juvenile tuber | 8.72 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 13.46 | |
| Mother_Juven | Mother tuber of Juvenile | 8.04 |