Detail information of GWHGAAEX000618/evm.TU.scaffold_1.387


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|110834305|ref|YP_693164.1|3.00E-95initiation factor eIF-2B [Alcanivorax borkumensis SK2]
KOGKOG14682.00E-161Predicted translation initiation factor related to eIF-2B alpha/beta/delta subunits (CIG2/IDI2)
nrgi|672126155|ref|XP_008786516.1|0PREDICTED: LOW QUALITY PROTEIN: methylthioribose-1-phosphate isomerase [Phoenix dactylifera]
Swissprottr|B6TZD1|MTNA_MAIZE0Methylthioribose-1-phosphate isomerase {ECO:0000255|HAMAP-Rule:MF_03119}
trEMBLtr|I1IMJ2|I1IMJ2_BRADI0Methylthioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_03119}
TAIRAT2G058302.00E-161NagB/RpiA/CoA transferase-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000081591186115927258+
Transcript Sequence

Network for GWHGAAEX000618

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01008.16IF-2B503505.10E-74
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08963mtnA Metabolic pathways map01100
Cysteine and methionine metabolismmap00270

Gene Ontology

GO term OntologyName
GO:0044249Biological Processcellular biosynthetic process
GO:0044237Biological Processcellular metabolic process

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms27.220
SRR2545915Juvenile tuber22.690
SRP108465SRR5643513five period of Gastrodia elata28.090
SRR5643514five period of Gastrodia elata19.940
SRR5643515five period of Gastrodia elata19.710
SRR5643524five period of Gastrodia elata19.530
SRR5643525five period of Gastrodia elata15.430
SRR5643528five period of Gastrodia elata15.100
SRR5643658five period of Gastrodia elata15.950
SRR5643659five period of Gastrodia elata27.400
SRR5643660five period of Gastrodia elata28.130
SRR5643661five period of Gastrodia elata26.650
SRR5643662five period of Gastrodia elata28.010
SRR5643663five period of Gastrodia elata24.390
SRR5643664five period of Gastrodia elata33.080
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_121.800
SRR6049655Rhizomagastrodiae_C368-T10_good_121.660
SRR6049656Rhizomagastrodiae_C368-T07_good_118.670
SRR6049657Rhizomagastrodiae_C368-T07_good_127.740
SRR6049658Rhizomagastrodiae_C368-T04_good_123.650
SRR6049659Rhizomagastrodiae_C368-T04_good_124.910
SRR6049660Rhizomagastrodiae_C368-T01_good_119.410
SRR6049661Rhizomagastrodiae_C368-T04_good_123.510
SRR6049662Rhizomagastrodiae_C368-T01_good_118.720
SRR6049663Rhizomagastrodiae_C368-T01_good_117.270
SRR6049664Rhizomagastrodiae_C368-T10_good_125.400
SRR6049665Rhizomagastrodiae_C368-T10_good_125.400
SRP279888GastroGastrodia elata tuber 35.11
JuvenJuvenile tuber24.20
Mother_GastroMother tuber of Gastrodia elata 26.01
Mother_JuvenMother tuber of Juvenile 37.94