Gene detail

Detail information of GWHGAAEX000621/evm.TU.scaffold_1.396

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4780	6.00E-60	Uncharacterized conserved protein
nr	gi\|743783224\|ref\|XP_010921352.1\|	1.64E-111	PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog isoform X1 [Elaeis guineensis]
Swissprot	tr\|A2Y040\|RPAP2_ORYSI	9.00E-91	Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
trEMBL	tr\|M0S643\|M0S643_MUSAM	1.00E-100	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P08020_001}
trEMBL	tr\|M0S643\|M0S643_MUSAM	1.00E-59	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P08020_001}
TAIR	AT5G26760	6.00E-60	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000008	16140626	16165770	-

Transcript Sequence
>GWHTAAEX000621 AAAATCTAAAATTGGAGGTTACTAGAATTCTAAATCCCTAAATCGAAATTTCTCTACCTCCATTGCTACCTCCCCTGCCGCAGCCCGCTGCCTCTCACTCGCGGGAAAAAATGTCATTGGTTTCCCTTACTCAGCCGATGTCCAATGCGGAGGCCATCTACTACATCCAGTTCTCCCTCATTGATAACCCTTCATGCTCAGCCGGACAGCTTTTCGCTGCTGGTTCCCTTCTGTCCCGCCCAGATTATGAAGACGTCATCGTCGAGCGCTCCATTGCTGGCCTCTGTGGCTACCCTTCGTGCTCCAATCCTCTCCCTGTGAACCACGACCGCCGTGGTCGATTCCGCGTGTCTCTTCGAGAACAGCGTATCTACGACCTCGAGGAGACCTATAAATACTGCTCCGAAGCTTGCGTTATCAGCAGCAGAGCGTTCTCCCTGAGCCTCAGCACTGACAGGGTGTCTGAAATGAATCAAGCAAAAATTGAGCAAGTTCTTCGGTTGCTTGGGATTTGGAAGCTTGGGGATGACGATTTAGGGGAGGAAGCCGGTGCTGCGATAAATAATTTGAGAATTAAGGAAAAAGAGTGTGCTGGAGCGGGGGAAGTTTCTTTGGATGATTGGATTGGGCCAGTGAATGCTATCGACGGGTATGTGCCCCAATGTGACAGAATTGGAGGTTCTGGGTCAAACATTTTATCCCAACAAAATTCTAGAAAGAAGATTGAGGGTGCGAGAGAAAGTGGAGCGCCATTTGCTGGTAGTGGCCTGTTTGAGGGTTATGAAACCAATGAATGTCATTCAAAGGAATCATTGGATGCTAAACAAACTATTAATAAAAAATTGGAAGAATCATTTACTTGTGATAAGAAAACAATGGAAAAGAATTCTACGTCAGAGACACCCAAGGTTAAATTGAAAAAGGATTTGGATGATTATGGGGGTTGTGATATGAATTTCACTAGCAGTGTAGTTGTTGGGGCTGGTTTTGATGAACATAATACTTTATCTTCTTCAACTATGTATATTTCAGAAATGATAAATGAACAGCTAGAAAATGTTGTCCTTGAAGAGAAAAATTCTAGAAAAAATGCAGGTATTTCAAGACCATCTAGATACAAACTTCATCAAAAGGAATTTTTGGCTGGTAAACAAACGATGACAAAAAACATTGAAGATCCAAGTACTTCTGATAAGAAAACAAAGTCAAAAAAATCTAAATCGTATGCATCAAAGGTTGAACTGAAAAAATGTTTTGATGATTATGGGGGCAGTAATATGATTCATAGTGCTTTATCTCTTCCAGGGATGAATATTTCAGAAATGATATCGAAACAGTTAGAAGGTGTTGGTCTTGAAGAAAACAATGCTGGAAAAAACTCACGTATATCAAGACCGTCTATATTCAAATTTCATAAAAGGTCGGAAGTTGCAATGCAGGAAAAAGTTGATTCAAAGGAGATTAATGAAGATTTGGTAGATACTTGCTTTGGCAAAGAATCTGACAAAGCTGCAGTTAGTATCTCTAATGATGGAGAGTTCTCTGAAATTAATATTTCATCGAAAGAACCTTTTGTTAAGGAACTTGAAGATAAAATTTTCTCAGAGAAGAAGACCATAACTGAAGGGAAATTGCACAAGTCTTGCTTAAAGGCTCCAGGATCTAGAAATGGAGACCGCTTTGTTAAATGGTCGGATGAAAAAAGAAATGCACCTCTAGAGAGTGAAAAAACAACGCCACAAGAATCGTTTGAAGAACATTTTGACAACTCTACACGTTTAATTTCAGCTGAAGTTTGTGCCACTGCACTTATCCAGGCTGCAGAATCTGTTACCTCGGGAAAAGCTGAAGTTGTGGATCCACTCGCAGATGCTGGACTTTTGATTTTACCACAATCTCAATCTCTCCAAGGGCATAGCGAAGATGATGTTAATTTCAAATTTGATCGAGGTATAGTAAAATGGCCTAAGAAGACTGTGCTCTTAGACACTGATGCATTTGAAGTTGAAGATTCTTGGCATGATACACCACCAGAAGGCTTCAGTCTAAATAATCTTTCACCATTTGCGACAATGTGGATGACACTGTTTGGATGGATAAATTGCTCTTCTTTGGCATATATATATGGATATGATGAAGCCTCGTGCAAAAAATTTGCACTTGTTAATGGAAAGGAATATCCAGGGAAAGTTACCTTAAGTGAAGGCCAATCAGTAGAAATAAGACGAGCACTGGATGGTTTTATTTGTCGTTACTTGCCTGCTGTTGTTGAGGATCAAAGGCTGCCAATACCAGTTTCGACCTTAGAAAAGCATACGGTTTGCTTGCTTGACACCATGTCTTTTATGGACGCCATACCTGCCTTCAAAATACGGCAGTGGCATGTGATTATTCTTTTGCTTATTGAAGCCCTTTCTGTTCATAAACTTCCGGCTCTAGCTGAACACTTAATGAGCAGGGCTATGCAGTTTCAACAGGTGCTTCATTCTGCTCAAATTAGTAAGGAGGAATATGAGATTATGAGAGACCTCATACTACCGCTTGGCAGATCAGCTGATTTCTCTGCTATGGTTTAAGGCATAAGTGTTTAGTGCGTAAGGAAATTACAAACAAGACATTCAATATTAATACGTCCGTTGTGAAGCACTTTAAAGATGGTGATCGCATGGAAGTTACGTATAAGACTAAAATTATGAGGGAAAAGCTAGAAAGCTAAGGAAGAATAATCCATATTCTTTGGAAGAGGTTCAATGATGGCAAATGTTGTTGTGAATATCTAAGCGTTTTTAGTGTTACTGATAGATACATTATAATTGTATGTTAAGATGTCATATTGTTCATTGCATTGTAATGCTTAATATATTAAAATATTCAAAATATGAATATGCAAACCAATTGGTTTTGAAGTGAAAAAATTTAATTTCTTCTCTTCCATCTTTTTTATCCATTAATAAACTTCTTTAACAAGATTTTCA

Network for GWHGAAEX000621

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04181.12	RPAP2_Rtr1	40	112	1.70E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	47.600
SRP064423	SRR2545915	Juvenile tuber	36.160
SRP108465	SRR5643513	five period of Gastrodia elata	12.390
	SRR5643514	five period of Gastrodia elata	12.040
	SRR5643515	five period of Gastrodia elata	11.650
	SRR5643524	five period of Gastrodia elata	12.130
	SRR5643525	five period of Gastrodia elata	13.370
	SRR5643528	five period of Gastrodia elata	10.870
	SRR5643658	five period of Gastrodia elata	19.730
	SRR5643659	five period of Gastrodia elata	16.620
	SRR5643660	five period of Gastrodia elata	20.270
	SRR5643661	five period of Gastrodia elata	17.560
	SRR5643662	five period of Gastrodia elata	14.830
	SRR5643663	five period of Gastrodia elata	18.820
	SRR5643664	five period of Gastrodia elata	19.540
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	29.610
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	23.130
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	22.510
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	38.780
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	41.220
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	52.210
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	37.520
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	34.500
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	20.160
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	27.240
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.430
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.430
SRP279888	Gastro	Gastrodia elata tuber	23.71
	Juven	Juvenile tuber	23.52
	Mother_Gastro	Mother tuber of Gastrodia elata	12.26
	Mother_Juven	Mother tuber of Juvenile	18.27