Detail information of GWHGAAEX000623/evm.TU.scaffold_1.398


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|262196624|ref|YP_003267833.1|1.00E-15RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365]
KOGKOG01493.00E-60Predicted RNA-binding protein SEB4 (RRM superfamily)
nrgi|672126051|ref|XP_008786462.1|5.39E-101PREDICTED: RNA-binding protein 24-like isoform X1 [Phoenix dactylifera]
Swissprottr|Q9SHZ6|UBA1A_ARATH1.00E-17UBP1-associated proteins 1A
trEMBLtr|A0A077RWS6|A0A077RWS6_WHEAT8.00E-94Chromosome 3B, genomic scaffold, cultivar Chinese Spring {ECO:0000313|EMBL:CDM85227.1}
TAIRAT1G229103.00E-60RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000081622033316316579-
Transcript Sequence

Network for GWHGAAEX000623

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_117721.20E-13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms5.660
SRR2545915Juvenile tuber6.750
SRP108465SRR5643513five period of Gastrodia elata9.720
SRR5643514five period of Gastrodia elata12.490
SRR5643515five period of Gastrodia elata10.960
SRR5643524five period of Gastrodia elata9.940
SRR5643525five period of Gastrodia elata17.450
SRR5643528five period of Gastrodia elata12.230
SRR5643658five period of Gastrodia elata18.500
SRR5643659five period of Gastrodia elata21.850
SRR5643660five period of Gastrodia elata27.740
SRR5643661five period of Gastrodia elata21.960
SRR5643662five period of Gastrodia elata23.430
SRR5643663five period of Gastrodia elata14.090
SRR5643664five period of Gastrodia elata21.900
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_116.050
SRR6049655Rhizomagastrodiae_C368-T10_good_116.680
SRR6049656Rhizomagastrodiae_C368-T07_good_115.700
SRR6049657Rhizomagastrodiae_C368-T07_good_117.700
SRR6049658Rhizomagastrodiae_C368-T04_good_118.170
SRR6049659Rhizomagastrodiae_C368-T04_good_125.240
SRR6049660Rhizomagastrodiae_C368-T01_good_120.090
SRR6049661Rhizomagastrodiae_C368-T04_good_120.040
SRR6049662Rhizomagastrodiae_C368-T01_good_19.280
SRR6049663Rhizomagastrodiae_C368-T01_good_114.570
SRR6049664Rhizomagastrodiae_C368-T10_good_114.540
SRR6049665Rhizomagastrodiae_C368-T10_good_114.540
SRP279888GastroGastrodia elata tuber 8.99
JuvenJuvenile tuber10.12
Mother_GastroMother tuber of Gastrodia elata 3.96
Mother_JuvenMother tuber of Juvenile 2.40