Gene detail

Detail information of GWHGAAEX000624/evm.TU.scaffold_1.399

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2489	Transmembrane protein
nr	gi\|672142820\|ref\|XP_008795274.1\|	PREDICTED: cleft lip and palate transmembrane protein 1 homolog [Phoenix dactylifera]
trEMBL	tr\|M0T7U8\|M0T7U8_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P17500_001}
TAIR	AT5G08500	Transmembrane CLPTM1 family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000008	16335997	16365895	-

Transcript Sequence
>GWHTAAEX000624 CCCCTTCCCCTTCCCCTTCCCCTATCAACAATTCCTAGATCGTGTTATCCTGCGGCTGGCGATGGTGGAGCCAGCAGCTGTGGCCGCACAGGCCCCGCCCGAGAGACGACAGCAGCAGCAGGGAGGGATGGGCCTGTTCGGAATAATCCGGCTGGCTTGTTTCGGCTACTTCGCCATGAAATTTTTCTCCCCGAAGAAACCCGTCGATACTTCGCAACTCATGTCAAACCTCTTCCAGAAGGGAGAGGCGTTGGATATGTGGCTGTATCTCTCTGATAAACAGAGGTTCAATGACTTCAGCAATGATCAGGCTCTTGTGTGGCATGAATCAAATATTCCATATGCTGTCTGGGAATCAGGTAGTACAAGGTCTCTTTCTCTGAAGCATACTCCAACAGAGGCTCTAAAACACAATGGGAGCCTTTTTGCTCATGTTTTCTTTGCTCGCTCTGGCTACACACCTGATCCATATGATCCTGAATATCAGCCAGGGTCTGCTTTCTCAAGATCACATCCTGTTGTGGCTTATTATCCTAAGCCCAAGTCGCTTCAAAAAAGAAGCTTATTGAACTCGCAGGATTCTGAAGAGAAAATATCTGCACCAGAAGCAAAGGATGATGTGATTGAACCCAAGGATGATGCTAACGTTGAACTAATTTCTTACTGGAAACCAAACATTACAATTAATCTTGTTGATGACTTCAATCAGTACTCTTACAATGCTCTTCCACCACATATTGCTGGATATTTGAACGTCGATCCTGTTACACGGAACTATTTTCCGACGATCTACTTTAATGAATTTTGGCTTCTGAAAGATAAGCTCATAGCCATCAATGAATCTGTGACAGAATTGCCCCTAAATCTAGAGGTAGGACCAATTGGCTTGAACAAGTGGCAGTTTTTCTTACAGATTGAGCAGTCATTCCAGATTCATCGCAGCTATGGAAGTATGGTTGAAGGAGAGGCTGATGAACTAAAGAGGGTCTTTTTGGAAGGCAACCCATATTTGCTACTGGTAACAATGGTTGTGTCTCTGTTTCATTCACTGTTTGACTTCTTGGCTTTCAAAAATGATATTCAGTTCTGGAATAAAAACAAATCTATGGAAGGATTGTCTGCAAAATCAGTTGTTGTAAGCTTCATCAGTCAGCTGATTGTTTTTCTTTATCTTCTTGACAATGATACTTCGTGGATGATCCTTGCTAGCTCTGGCATTGGTTTATGCATTGAATTCTGGAAAATTGGAAAAGCTATGCACATCGAGATTGACAGGAGTGGAAGAATCCCCATGTTGCGATTCCGAGATCGTGAATCATATACAAAAAATAAAACAAAGGAATATGATGATCTTGCCATGAAGTACCTTTCCTACGTTCTTTTCTTGCTAGTTGTCTGTTTTTCCATATACTCACTAATGTATGAGCAGCACAAGAGCTGGTATTCCTGGATACTTTCGTCTCTTACTAGTTGTGTATACATGTTTGGCTTTATTATGATGTGTCCTCAGCTATTTATTAACTACAAAATGAAATCGGTTGCTCATCTTCCATGGAGGCAAATGACATACAAGTTCCTCAACACTATCATCGATGATCTTTTTGCATTTGTCATAAAAATGCCTACACTACACCGCCTGTCGGTATTCAGAGACGATATCATCTTTTTGATTTATCTCTACCAGAGATGGGTGTATCCTGTGGACAAGGCAAGGGTTAACGAGTTCGGTTTTGGCGGCGAAGAAGATCAAACCTTGGTTAAACAAAATGACTCTGCTGCCACAATAGATGATGCTGCAGGCAATGAAAATAACAAGAAAACCAACTGAAGCTGCAAAAATAATTTTTGTTTTTCTTATATTCTCTTGGGCAGCTTTGAGAATATATCCTTTTTATGATTATTTGTGAGCTATTTTTTAATTTAAGCTTAATGTGATGTTAAAATTTTATATATATTTATGAACTTGCTAAATACTATTTTGCGCATGAAGAAGTTCTAATGACAAGTCTGCTTCTGCTGCTTCAAACTTAGGGGTTAGGGTTTTGTTCATTGTTTTAAAGTGTTGTATTAATTTTCCTGAATGTTAAATTATTAAAAAATTGCTTCCTTTTTAAGGTAGATTCCATGCAACAGTTTTTTTTGGATATGTATGTGATTTTGATTTACAAGCAATATTAGTTTTATATTTGGATTTTCATACAATGTCATTTGC

Network for GWHGAAEX000624

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05602.11	CLPTM1	39	454	1.10E-149

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	162.910
SRP064423	SRR2545915	Juvenile tuber	195.920
SRP108465	SRR5643513	five period of Gastrodia elata	68.310
	SRR5643514	five period of Gastrodia elata	66.720
	SRR5643515	five period of Gastrodia elata	66.680
	SRR5643524	five period of Gastrodia elata	65.190
	SRR5643525	five period of Gastrodia elata	59.100
	SRR5643528	five period of Gastrodia elata	56.130
	SRR5643658	five period of Gastrodia elata	57.770
	SRR5643659	five period of Gastrodia elata	61.630
	SRR5643660	five period of Gastrodia elata	66.190
	SRR5643661	five period of Gastrodia elata	62.970
	SRR5643662	five period of Gastrodia elata	53.430
	SRR5643663	five period of Gastrodia elata	61.550
	SRR5643664	five period of Gastrodia elata	51.820
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	91.540
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	62.280
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	88.640
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	99.380
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	100.980
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	111.680
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	99.320
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	99.110
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	77.310
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	86.560
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	89.000
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	89.000
SRP279888	Gastro	Gastrodia elata tuber	85.66
	Juven	Juvenile tuber	152.22
	Mother_Gastro	Mother tuber of Gastrodia elata	73.31
	Mother_Juven	Mother tuber of Juvenile	124.60