Detail information of GWHGAAEX000635/evm.TU.scaffold_1.429
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|260062769|ref|YP_003195849.1| | 2.00E-68 | cystathionine beta-lyase [Robiginitalea biformata HTCC2501] |
| KOG | KOG0053 | 4.00E-116 | Cystathionine beta-lyases/cystathionine gamma-synthases |
| nr | gi|695047216|ref|XP_009411481.1| | 1.01E-129 | PREDICTED: methionine gamma-lyase-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9SGU9|MGL_ARATH | 1.00E-116 | Methionine gamma-lyase |
| trEMBL | tr|B9RYU1|B9RYU1_RICCO | 1.00E-121 | Cystathionine gamma-synthase, putative {ECO:0000313|EMBL:EEF43443.1} |
| TAIR | AT1G64660 | 4.00E-116 | methionine gamma-lyase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000008 | 19021183 | 19022031 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000635
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01053.19 | Cys_Met_Meta_PP | 50 | 256 | 1.40E-56 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01761 | E4.4.1.11 | Metabolic pathways | map01100 |
| Cysteine and methionine metabolism | map00270 | ||
| Selenocompound metabolism | map00450 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0019346 | Biological Process | transsulfuration |
| GO:0030170 | Molecular Function | pyridoxal phosphate binding |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 30.270 |
| SRR2545915 | Juvenile tuber | 71.590 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 263.970 |
| SRR5643514 | five period of Gastrodia elata | 226.310 | |
| SRR5643515 | five period of Gastrodia elata | 211.380 | |
| SRR5643524 | five period of Gastrodia elata | 184.030 | |
| SRR5643525 | five period of Gastrodia elata | 125.420 | |
| SRR5643528 | five period of Gastrodia elata | 181.930 | |
| SRR5643658 | five period of Gastrodia elata | 37.340 | |
| SRR5643659 | five period of Gastrodia elata | 241.760 | |
| SRR5643660 | five period of Gastrodia elata | 320.090 | |
| SRR5643661 | five period of Gastrodia elata | 205.010 | |
| SRR5643662 | five period of Gastrodia elata | 297.100 | |
| SRR5643663 | five period of Gastrodia elata | 206.120 | |
| SRR5643664 | five period of Gastrodia elata | 168.260 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 253.960 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 94.550 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 288.220 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 194.060 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 172.130 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 147.830 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 210.230 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 216.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 342.000 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 337.830 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 305.000 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 305.000 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 196.84 |
| Juven | Juvenile tuber | 128.85 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1,494.59 | |
| Mother_Juven | Mother tuber of Juvenile | 1,057.91 |