Gene detail

Detail information of GWHGAAEX000636/evm.TU.scaffold_1.430

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|182415905\|ref\|YP_001820971.1\|	3.00E-44	bile acid:sodium symporter [Opitutus terrae PB90-1]
KOG	KOG2718	1.00E-154	Na+-bile acid cotransporter
nr	gi\|743881501\|ref\|XP_010908919.1\|	0	PREDICTED: probable sodium/metabolite cotransporter BASS5, chloroplastic [Elaeis guineensis]
Swissprot	tr\|Q650U0\|BASS5_ORYSJ	0	Probable sodium/metabolite cotransporter BASS5, chloroplastic (Precursor)
trEMBL	tr\|I1QQJ1\|I1QQJ1_ORYGL	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:ORGLA09G0132000.1}
TAIR	AT4G22840	1.00E-154	Sodium Bile acid symporter family

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000008	19243446	19253981	-

Transcript Sequence
>GWHTAAEX000636 CTCATGAAAAAATTCCCCCTTTGATGCAAACTGGATTGACACTAATTTCTTCAGGAATTCTTCCGCTACTGGGCGGCAACACTCCACCAGTCGCTCTGTCGCGATGAACCCCGTCGCAGTAGCCGTTCAGGTCAATACACCCACTCTGCTCTTGCTTCGGAGATCAATCGATCTTTCACCTATTTTCTCCGGCGAAAAATTTAACCGAACTGTAGCAATGCCACCGTCGTTGGAGTTTACACGATCACATTCCACTCTTTACAAGCGTACCTCAATAAGCGAAAGATTTACAGCTCTGGTGCGGAGGTCCGCACCTCCTTTGTTCAATACTGGAGAAGATCCGATCACCCCTACCCCGAATGTTGGCCAAAGCAAGGTTGATAGTATTCTTAACATTCTGAAAAGAGCGAATTCCCTTATTCCACACATAGTATTGGCTAGTACTGCCCTGGCTCTTGGTTATCCACCGTCTTTTACATGGTTTACAACCAGATATTATGCGCCTGCATTGGGCTTTTTGATGTTTGCTGTTGGAGTCAACTCTAGTCCAAAGGATTTTCTGGAAGCTATTAGAAGACCAGAAGTTATTGCGGCTAGTTATGCTGGACAGTACATCATAAAACCCATCCTTGGTTATATATTTGGTATTGTCGCAGTTTCCCTACTAAATCTGCCTTACTCCTTAGGTGCGGGGATCATGCTAGTTTCATGCGTTAGTGGAGCACAGTTGTCAAACTACGCAACATTTCTGACAGATCCACATTTGGCTGCTCTAAGCATTGTCATGACATCTCTGTCAACTGCTACTGCTGTTTTTGTAACCCCTTTGCTATCACTGTTGCTCATTGGCAAGAAGTTACCAGTGGATGTAATTGGCATGATGTCAAGTATAATTCAGATTGTAGTTGCACCTATTACAGCAGGATTGCTTTTGAACAGGTTTCTCCCCTATTTTTGTACGGCTATTCAACCCTTCCTTCCGCCACTTTCTGTCTTAGTGACGGCCCTTTGTGTTGGTTCTCCTTTGGCAATAAACATCGAAGCAGTAAAGTCTCCTTTCGGAATAGCGATTTCGCTGCTCGTATTCGGATTCCATGCATCAGCTTTTATGGTGGGATACAGCCTATCCGGTTGGGTGTTCAGAAAGGTTGAGGATGTAAAAGCGCTCCAAAGAACCATTTCATATGAGACAGGAATGCAAAGCAGTCTTCTAGCGCTCGCACTGGCCAACAGATTTTTCCAGGATCCTCTTGTCGGGGTTCCTCCTGCCATATCTGTAGTGCTGATGTCTTTAATGGGATTCTCACTCGTTATGTTATGGTCTAAGAATCAAAAGGAGGAGGCATAGTTGCAGTGTAAAGAGCTACCGCAAATGCAGGGATCTAATGCGCATATTTACAAAGAAATTACACTACAAAATTTTCCAATAATGCTCAAAATATGTGTAAAAGATTGATGAAATTTGATGGCCAAATTCAAATCGCTACTGTACCTAATTTTTTATTCAATTTCTCCTGATATGCCAAGTGTAAACTTTTAATTGGTTCAATGCATTTGAGCTTTAGCTCTGCGTATCTCACA

Network for GWHGAAEX000636

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01758.15	SBF	134	316	7.00E-40

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.130
SRP064423	SRR2545915	Juvenile tuber	4.030
SRP108465	SRR5643513	five period of Gastrodia elata	6.850
	SRR5643514	five period of Gastrodia elata	6.850
	SRR5643515	five period of Gastrodia elata	7.110
	SRR5643524	five period of Gastrodia elata	6.800
	SRR5643525	five period of Gastrodia elata	9.310
	SRR5643528	five period of Gastrodia elata	9.730
	SRR5643658	five period of Gastrodia elata	9.630
	SRR5643659	five period of Gastrodia elata	5.520
	SRR5643660	five period of Gastrodia elata	5.050
	SRR5643661	five period of Gastrodia elata	5.940
	SRR5643662	five period of Gastrodia elata	5.910
	SRR5643663	five period of Gastrodia elata	5.940
	SRR5643664	five period of Gastrodia elata	4.220
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.380
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	10.960
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.520
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.160
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.400
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.350
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.020
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.280
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.520
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.110
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.110
SRP279888	Gastro	Gastrodia elata tuber	5.10
	Juven	Juvenile tuber	4.97
	Mother_Gastro	Mother tuber of Gastrodia elata	4.36
	Mother_Juven	Mother tuber of Juvenile	3.88