Detail information of GWHGAAEX000637/evm.TU.scaffold_1.432
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|189502744|ref|YP_001958461.1| | 1.00E-24 | hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2] |
| nr | gi|672178231|ref|XP_008809243.1| | 0 | PREDICTED: probable receptor protein kinase TMK1 [Phoenix dactylifera] |
| Swissprot | tr|P43298|TMK1_ARATH | 0 | Probable receptor protein kinase TMK1 (Precursor) |
| trEMBL | tr|A0A061GVW5|A0A061GVW5_THECC | 0 | Leucine-rich repeat protein kinase family protein {ECO:0000313|EMBL:EOY33312.1} |
| TAIR | AT1G66150 | 0 | transmembrane kinase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000008 | 19403291 | 19406772 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000637
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 27 | 66 | 0.25 |
| PF08263.11 | LRRNT_2 | 333 | 368 | 0.011 |
| PF07714.16 | Pkinase_Tyr | 576 | 845 | 1.40E-45 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-IX |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.310 |
| SRR2545915 | Juvenile tuber | 4.260 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.200 |
| SRR5643514 | five period of Gastrodia elata | 6.590 | |
| SRR5643515 | five period of Gastrodia elata | 6.500 | |
| SRR5643524 | five period of Gastrodia elata | 5.950 | |
| SRR5643525 | five period of Gastrodia elata | 2.410 | |
| SRR5643528 | five period of Gastrodia elata | 2.440 | |
| SRR5643658 | five period of Gastrodia elata | 2.070 | |
| SRR5643659 | five period of Gastrodia elata | 7.680 | |
| SRR5643660 | five period of Gastrodia elata | 8.290 | |
| SRR5643661 | five period of Gastrodia elata | 8.090 | |
| SRR5643662 | five period of Gastrodia elata | 6.440 | |
| SRR5643663 | five period of Gastrodia elata | 9.850 | |
| SRR5643664 | five period of Gastrodia elata | 6.780 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.850 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.560 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 9.150 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.270 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.480 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.540 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.990 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.430 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.190 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.090 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.000 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.000 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.75 |
| Juven | Juvenile tuber | 6.42 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.85 | |
| Mother_Juven | Mother tuber of Juvenile | 5.51 |