Gene detail

Detail information of GWHGAAEX000651/evm.TU.scaffold_10.7

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1241	Karyopherin (importin) beta 1
nr	gi\|743842857\|ref\|XP_010937915.1\|	PREDICTED: importin subunit beta-1-like [Elaeis guineensis]
Swissprot	tr\|Q9FJD4\|IMB1_ARATH	Importin subunit beta-1 {ECO:0000305}
trEMBL	tr\|M0T2D5\|M0T2D5_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P28110_001}
TAIR	AT5G53480	ARM repeat superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000006	597575	618111	-

Transcript Sequence
>GWHTAAEX000651 TTAGCCCTAATTCCATCGTTTTTCATTGTGCTCGCTCCCGCCACTCGCTCGTTGAAGGTTGGAAGGCTTCGCTTTTTGCTCTTCTGTCTTCCTGAGTCTGCGAGGCGGTGACGGCGTGCCCTGAGACGTCGACGAAATCGCCGGGAGACTTCCCTGTGATCTTCTTGTGCACTTTATCGTTCCTCTATCTAGGTCTCATTCGTGAGACTGACTTCAGCTTTCTCCTCCAAATCTGATTCATAGTTTCAGCATGTCATTGCAAATTACTCAGCTTCTTTTGTCTGCACAATCTGCTGATGGGCTGATTCGGAGTGCTGCGGAGGAGAATCTTAAGCTATTTCAGAATCAAAACCTCACTCACTTTCTGTTTTCCTTGTCCGTAGAATTATCCGATGATCAGAAACCTCCTGAATCACGAAAACTTGCTGGTATCATCCTTAAAAACTCCTTAGATGCTAAGGATGCTTTAAGAAAAGCTGAGTTGACTCAGCAATGGGTCAATGTTGATGCTTCTATCAAAGTCCAAATCAAGGAATCTCTACTGCTAACGCTACGATCACCTGTATCCGAGGCTAGTCAAACCACATCTCAAGTGATTGCCAAGATTGCGTCCATTGAAATACCCCGGAAAGAATGGCAAGATCTTATTGGCCGGCTTCTAACCAACATGACCCTTCCCGATGCTCCAGATACACTGAGACAGGCAACATTAGAGACGCTAGGATATCTTTGCGAAGAGATTTCTCCTCAAGATTTAGAGCAGGAAGAAGTAAATGCTGTTCTTACCGCCGTTGTACAGGGAATGATGAGCGGTGTGCAGGAGAACCATAAAGTTCGTCTAGCTGCGGTGAGGTCTCTGTGCAATGCACTTGACTTTGCACAAACTAATTTTGAGAATGAGATGGAGAGGAACTATATCATGAAGATTGTATGTGAGACCGCTGTATCGAAAGAGCCTGAGATCAGACAGGCAGCATATGAGTGTCTTGTTTCTATAGCCTCCATCTACTATGAATTTCTTGGACCTTACATGGAAACACTTTTTGGTTTGACTGCAAATGCTGTGAAAGGGGATGAGGAATCTATCGCACTTCAGGCTGTCGAGTTTTGGAGCTCGATATGTGACATGGAGATTCAAATGCAGGATGAATACGAGACGGCTGAGGCTAGTAGCTCAGAGGGTTACCATTTTATACAGAGAGCTCTTTCCATGCTTGTACCTATGCTGCTGGAGACGCTACTCAAACAAGAAGAGGATCAGGATCAAGATGATAGCATCTGGAACCTTTCCATGGCCGGGGGCACGTGCCTTGGGCTTGTTGCGAAGACTGTAGGTGATGATATTTTGCCTCTCGTGATGCCTTTTGTTGAGGGCAATATAACAAAGCCTGATTGGAGGAATCGTGAGGCAGCTACTTTTGCATTTGGATCTATTCTTGAGGGCCCTTCTATTGAAAAACTTTTACCCATGGTTCACGCTGGGCTTGAATTCTTTCTGAACGCCATGAAAGATCAAAATAGCCATGTAAAAGATACAACAGCTTGGACTTTGGGCAGAATTTTTGAAATTTTGCATTCTTCTATTAGTGAATACCAAGTGGTGACGCCTGCAAATCTTCAGAGGATCATATCCGTATTGCTGGAAGGCATCAAGGATACCCCGAACGTAGCCGACAAGGTTTGTGGGGCTATTTATTTTTTTGCTCAGGGATATGAGGATGCGGGATCCAATTTGTCAATTCTCACTCCCTATCTTGGTGAGATTATTTCCGCACTCCTTTGGGCTACAGATCGTACCGATGTCAGCAACTCCAGACTTCGAATCTCGGCATATGAGACACTGAATGAGATTGTAAGGTGCAGTCAAGTTCCTGAGACTTTGAACATGATTGCCCAGTTACTCAATGAAATCATGAACAAATTAGGCCGGAACGTGGAGCTTCAGACCTCATCATCTGAAGAAAAAGAGAAGCAGAGTGATCTGCAAGCCTCGCTTTGTGGAGTTCTGCAAGTAATAATACAGAAGCTGTGTAGCTCTGACGAAGCCAAAAGAATCTTTCTCCAGGCTGCAGATCAGCTGATGATGCTGTTCCTCAGGGTCTTTGCTTGTCGCAGCTCCTCTGTGCATGAAGAAGCCATGCTCGCAATTGGAACTTTTGCGTATGCGACTGGCCCGGAGTTTGCCAAGTATATGCCAGAGTTCTATCAATATCTAAATATGGGTTTGCAGAATTATGAGGAGTATCAGGTCTGCTCTATATCTGTTGGAGTTGTTGGCGACATTTGTCGTGCCCTGGATGATAAGATCCTTCCATATTGTGATGGAATTATGTCCAATCTCCTGAAGAATCTTTCGAATTCTATGCTTCACCGGTCGGCCAAAGCACCAATGTTTTCATGCTTTGGGGATATTGCACTTGCTATTGGTGATCATTTCGAGAAGTATGTTCCGTATGTAATGCCAATGCTTCAGGGGGCTGCTGAGCTCTGTGCTAATTTGGACAGCAATGATGAAGACATGCTGGAGTACGGAAATCATCTGAGGCGAGGCATCTTTGAAGCATACTCCGGCATTCTTCAAGGATTCAAAACTAACAAGGCTGAGCTGATGACCCCTTTTGCAAATCATCTTCTGCAGTTCACCGAAGCTGTATTTAAGGAAACTAACAGGGATGATGCTGTTACAAAAGCTGCAATTGCTGTGATTGGTGATCTAGCTGATGCACTTGGTCCCAGCATCAAACTTCTGCTCAAAAATACTGATTTTCATGTTCATTTCTTGGGGGAATGTTTCAATTCTGAGGATGAACAATTGAAGAAAACTGCTATGTGGGCTCAGGGAATGATTGGACGGGTACTCTCTTCTTAACTTTTTTTTTTCTTTTTTGCAATTTTTTTAGATTTTCACCCCCAATTTCATTATTAGTATATATATAAATATATATTAGGTGTCGTAGAAAATGTTCATGATATCAGTGCAGGCGCATCCTGTGCCTGTGTATTGATCTTTTGTATCCCTTTTTTTCTCATTTTCTTTTTGGGGGTTGTAGGAAAAACATAAAGCGTCCATCTTCTTAGGGTTAATATGGTGGTGATGATGATGATTTTGAACTTTAATGAGAAATGCTACCACAGCTGTGGTTGCTTATGTTTTGGAGAAAAAAAAATTATAAGAGGGATGTTTCTGATTTTTGTATTAGCAATTCTTGCCTTTTTATTCATCAGCAGTGCCACTGAATGTCCTCACTGAATGTTTATTCACATAATTACCACCCTCGTGTTCTATTTGTTAAATTACTATTCAAATTCCCTGCTTCATTTGCT

Network for GWHGAAEX000651

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03810.18	IBN_N	23	101	3.70E-10
PF13513.5	HEAT_EZ	382	437	4.40E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14293	KPNB1, IPO1	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0006886	Biological Process	intracellular protein transport
GO:0008536	Molecular Function	Ran GTPase binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	11.460
SRP064423	SRR2545915	Juvenile tuber	13.790
SRP108465	SRR5643513	five period of Gastrodia elata	14.330
	SRR5643514	five period of Gastrodia elata	13.860
	SRR5643515	five period of Gastrodia elata	12.970
	SRR5643524	five period of Gastrodia elata	11.990
	SRR5643525	five period of Gastrodia elata	8.140
	SRR5643528	five period of Gastrodia elata	9.330
	SRR5643658	five period of Gastrodia elata	9.480
	SRR5643659	five period of Gastrodia elata	21.970
	SRR5643660	five period of Gastrodia elata	23.900
	SRR5643661	five period of Gastrodia elata	19.830
	SRR5643662	five period of Gastrodia elata	19.050
	SRR5643663	five period of Gastrodia elata	17.460
	SRR5643664	five period of Gastrodia elata	15.730
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	15.220
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	12.380
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	18.520
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	12.300
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	15.640
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	12.600
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	16.530
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	15.570
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	22.480
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	21.160
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	19.310
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	19.310
SRP279888	Gastro	Gastrodia elata tuber	16.72
	Juven	Juvenile tuber	17.24
	Mother_Gastro	Mother tuber of Gastrodia elata	12.67
	Mother_Juven	Mother tuber of Juvenile	12.99