Detail information of GWHGAAEX000656/evm.TU.scaffold_10.17


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41971.00E-26FOG: PPR repeat
nrgi|573958000|ref|XP_006661209.1|1.45E-38PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Oryza brachyantha]
Swissprottr|Q9LUJ2|PP249_ARATH3.00E-27Pentatricopeptide repeat-containing protein At3g22690
trEMBLtr|J3MXB3|J3MXB3_ORYBR1.00E-39Uncharacterized protein {ECO:0000313|EnsemblPlants:OB09G16420.1}
TAIRAT3G226901.00E-26Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000612072071207704+
Transcript Sequence

Network for GWHGAAEX000656

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.440
SRR2545915Juvenile tuber0.740
SRP108465SRR5643513five period of Gastrodia elata0.250
SRR5643514five period of Gastrodia elata0.970
SRR5643515five period of Gastrodia elata2.130
SRR5643524five period of Gastrodia elata1.650
SRR5643525five period of Gastrodia elata2.240
SRR5643528five period of Gastrodia elata0.780
SRR5643658five period of Gastrodia elata1.960
SRR5643659five period of Gastrodia elata2.250
SRR5643660five period of Gastrodia elata1.580
SRR5643661five period of Gastrodia elata2.050
SRR5643662five period of Gastrodia elata2.540
SRR5643663five period of Gastrodia elata2.930
SRR5643664five period of Gastrodia elata1.680
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_10.000
SRR6049655Rhizomagastrodiae_C368-T10_good_10.000
SRR6049656Rhizomagastrodiae_C368-T07_good_10.220
SRR6049657Rhizomagastrodiae_C368-T07_good_10.400
SRR6049658Rhizomagastrodiae_C368-T04_good_10.000
SRR6049659Rhizomagastrodiae_C368-T04_good_10.000
SRR6049660Rhizomagastrodiae_C368-T01_good_10.000
SRR6049661Rhizomagastrodiae_C368-T04_good_10.000
SRR6049662Rhizomagastrodiae_C368-T01_good_10.000
SRR6049663Rhizomagastrodiae_C368-T01_good_10.000
SRR6049664Rhizomagastrodiae_C368-T10_good_10.370
SRR6049665Rhizomagastrodiae_C368-T10_good_10.370
SRP279888GastroGastrodia elata tuber 0.77
JuvenJuvenile tuber1.72
Mother_GastroMother tuber of Gastrodia elata 1.06
Mother_JuvenMother tuber of Juvenile 1.55