Detail information of GWHGAAEX000661/evm.TU.scaffold_10.21
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0939 | 0 | E3 ubiquitin-protein ligase/Putative upstream regulatory element binding protein |
| nr | gi|743813550|ref|XP_010929754.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL2-like [Elaeis guineensis] |
| Swissprot | tr|Q8GY23|UPL1_ARATH | 0 | E3 ubiquitin-protein ligase UPL1 |
| trEMBL | tr|K3Z321|K3Z321_SETIT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si020939m} |
| TAIR | AT1G55860 | 0 | ubiquitin-protein ligase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000006 | 1535963 | 1564095 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000661
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF06012.11 | DUF908 | 105 | 410 | 6.30E-40 |
| PF06025.11 | DUF913 | 473 | 804 | 6.90E-66 |
| PF00627.30 | UBA | 1303 | 1340 | 2.10E-09 |
| PF14377.5 | DUF4414 | 2573 | 2670 | 5.00E-26 |
| PF00632.24 | HECT | 3358 | 3668 | 2.20E-94 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | HECT |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10592 | HUWE1, MULE, ARF-BP1 | Ubiquitin mediated proteolysis | map04120 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0004842 | Molecular Function | ubiquitin-protein transferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 129.380 |
| SRR2545915 | Juvenile tuber | 75.980 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 34.430 |
| SRR5643514 | five period of Gastrodia elata | 42.330 | |
| SRR5643515 | five period of Gastrodia elata | 40.540 | |
| SRR5643524 | five period of Gastrodia elata | 41.230 | |
| SRR5643525 | five period of Gastrodia elata | 41.770 | |
| SRR5643528 | five period of Gastrodia elata | 33.750 | |
| SRR5643658 | five period of Gastrodia elata | 37.580 | |
| SRR5643659 | five period of Gastrodia elata | 50.340 | |
| SRR5643660 | five period of Gastrodia elata | 62.740 | |
| SRR5643661 | five period of Gastrodia elata | 46.890 | |
| SRR5643662 | five period of Gastrodia elata | 43.360 | |
| SRR5643663 | five period of Gastrodia elata | 48.360 | |
| SRR5643664 | five period of Gastrodia elata | 57.540 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 45.330 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 36.460 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 45.590 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 48.690 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 66.210 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 73.380 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 57.090 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 65.950 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 44.780 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 51.410 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 41.490 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 41.490 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 78.44 |
| Juven | Juvenile tuber | 82.08 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 47.10 | |
| Mother_Juven | Mother tuber of Juvenile | 91.95 |