Detail information of GWHGAAEX000663/evm.TU.scaffold_10.23


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08002.00E-104FOG: Predicted E3 ubiquitin ligase
nrgi|743757640|ref|XP_010922953.1|2.60E-134PREDICTED: E3 ubiquitin-protein ligase At1g63170-like [Elaeis guineensis]
Swissprottr|Q8GUU2|RIE1_ARATH5.00E-25E3 ubiquitin protein ligase RIE1
trEMBLtr|D7UAM0|D7UAM0_VITVI7.00E-129Putative uncharacterized protein {ECO:0000313|EMBL:CBI39785.3}
TAIRAT4G265802.00E-104RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000616482401650937-
Transcript Sequence

Network for GWHGAAEX000663

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_22733152.20E-11
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms10.640
SRR2545915Juvenile tuber16.310
SRP108465SRR5643513five period of Gastrodia elata11.460
SRR5643514five period of Gastrodia elata13.200
SRR5643515five period of Gastrodia elata14.060
SRR5643524five period of Gastrodia elata14.160
SRR5643525five period of Gastrodia elata53.750
SRR5643528five period of Gastrodia elata52.630
SRR5643658five period of Gastrodia elata100.250
SRR5643659five period of Gastrodia elata13.480
SRR5643660five period of Gastrodia elata10.440
SRR5643661five period of Gastrodia elata13.920
SRR5643662five period of Gastrodia elata12.360
SRR5643663five period of Gastrodia elata14.510
SRR5643664five period of Gastrodia elata12.690
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_112.700
SRR6049655Rhizomagastrodiae_C368-T10_good_116.390
SRR6049656Rhizomagastrodiae_C368-T07_good_115.780
SRR6049657Rhizomagastrodiae_C368-T07_good_19.430
SRR6049658Rhizomagastrodiae_C368-T04_good_19.290
SRR6049659Rhizomagastrodiae_C368-T04_good_18.500
SRR6049660Rhizomagastrodiae_C368-T01_good_19.430
SRR6049661Rhizomagastrodiae_C368-T04_good_113.590
SRR6049662Rhizomagastrodiae_C368-T01_good_114.470
SRR6049663Rhizomagastrodiae_C368-T01_good_112.580
SRR6049664Rhizomagastrodiae_C368-T10_good_115.170
SRR6049665Rhizomagastrodiae_C368-T10_good_115.170
SRP279888GastroGastrodia elata tuber 14.93
JuvenJuvenile tuber9.06
Mother_GastroMother tuber of Gastrodia elata 34.43
Mother_JuvenMother tuber of Juvenile 18.45