Gene detail

Detail information of GWHGAAEX000667/evm.TU.scaffold_10.28

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672170714\|ref\|XP_008805424.1\|	6.02E-49	PREDICTED: dentin sialophosphoprotein-like isoform X1 [Phoenix dactylifera]
trEMBL	tr\|B9STL3\|B9STL3_RICCO	4.00E-38	Putative uncharacterized protein {ECO:0000313\|EMBL:EEF33049.1}
TAIR	AT1G05090	2.00E-27	dentin sialophosphoprotein-related

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000006	1814877	1835856	+

Transcript Sequence
>GWHTAAEX000667 AGCGACCAGAAGAGAATAACCAATAGCGTCGAAAAGCCAGAGAATGGACACAGACTTGCAACTTAAGACAAAAAGGATTAAGTAATCCACGCCGCAAATCGCAAAATGATGCGAATTGCACCGTTGAATTACTTAATCCGCTCGCTTCCGATTTTACTTTACTGATTTGATCAAATCTAATCTGATGAAACCGGATGGTGGGGTTCGATTTAAACGATTTTTAAATCGTGCGTATGAAGTATGCAGTGCTCAAAACGAAACGGAGATAGAGAGAGAGACGGAGCGAGCCCTAATGGCGCCAGATTTCCCTTTCGATCTGATTAATGACATAAAGATCTCCCTTCGTAAGGCCGCCGGAGCGCCGTCTTACGATCCCAATGACGCTGCTATTCCTTCCCTGCCTTCCATTGCCGATGCCGTGGCTGCCCTCGATCCCACCCTTCCCGATTACCTCCGCTGTATGAGATGCCATGGAGGACTTTGCAGAGGACTCAAGTCGACGCTCTGTATCTTTTGTGGTACAGAACAGCGACGAGATGGTATTTTTCGGTCGATCTTCTTCAACTCCACCGCCGGTTACCGGAAATTCCTCCAATCCCTAGACCTTGACGGTTCGGAAATTGTTAATTTGGAATCACAATCAGAGTCAAGTGAGAGCCATGATTCATCAAAAGGCAGGGTACCGTTGTCAGAGATTTTGAATCTGGAGTTAAGGTGGCCTGAAGCAGATGTAAATAATAGTAATAATAATAATGGCAGTAGTAAGACTGCTTCTCTGCAGCCAGCCATTATAAGCTTATCAGGTGCCAATTTGGATAATAACAATATCGACAATACCCCTCATGTTTGCTCTTCTGCGGATACCAATTCTGGCGGTCCCGATGAAGCTTTTGCTGACTGGGAAACCGGCTTCCGATCTGCCAGTTCCATACAAATCGATCCCCTCCTGAAATCTTCGAACTCCCAGGCGGTCAATCTTTTCGTCAACCGTGAAACCATCGCAGCAGACTCCAGGCGTATCAATCATGCCTACAATTCTGACATTGAATTTTCTTCATTCATGATATCAAAAGAAACTGCTCAAATAGAGAGTGCTACCAGCAGTTTTGTGGGTGAGCTCAAGAATGAAGAGAAACAAGTAACTTCAGATGATTTCCAGCAAAGCGGCTCAATTGAAATCATGAAAGCGGGAAACCTAAATCATGGTGATGATGATGATGGCTCGTTCGATGCCTGGCAGGATTTCGCGACCGCAGCAGAAATGGCTCATGTGCTTCCTGGCGAAGCGAACTCTGGAGATGTGGAGAACATGGAGGAATATGGTAGCTTTAAACAATCGGAATTGCTCTCGGCTTGTGATTTTTCTTCGTCGGAATGCCAGGTGGACGTGTTGCTGGGGCAGTTACCGGACCTCTCGTTCATGCTTGAGGAATCCCTCTGCGTCCCGAAGAAGCTAATCAATTCTAAGCTGAGATGAATGATTTGCTGTATGTTTTTTGCCTAATGTTGGGAGAAACAAGTGTCAGATTTTGGGTAGGTGTGAGAGGGCTCTTCGGATGCTTCTTAGCGAACTTGATGAAGGCAGCACTCTCCAATGTATAAACATTCAGACTGAATCATTGAAAAAAATGATTCTTGAGAATATAGCATGCTTTTACAGTATATTTTTTGGCTGTATTATTATTACTGTTGATGTTTTGTTCCTTACTTTCGTTCTCAATTGCTTCTCATTGGTCAA

Network for GWHGAAEX000667

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.720
SRP064423	SRR2545915	Juvenile tuber	6.090
SRP108465	SRR5643513	five period of Gastrodia elata	9.050
	SRR5643514	five period of Gastrodia elata	8.110
	SRR5643515	five period of Gastrodia elata	7.750
	SRR5643524	five period of Gastrodia elata	8.860
	SRR5643525	five period of Gastrodia elata	13.740
	SRR5643528	five period of Gastrodia elata	11.740
	SRR5643658	five period of Gastrodia elata	8.420
	SRR5643659	five period of Gastrodia elata	8.090
	SRR5643660	five period of Gastrodia elata	9.540
	SRR5643661	five period of Gastrodia elata	8.510
	SRR5643662	five period of Gastrodia elata	9.570
	SRR5643663	five period of Gastrodia elata	8.630
	SRR5643664	five period of Gastrodia elata	8.710
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.310
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.640
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	9.110
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.960
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.930
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	9.320
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.670
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.640
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.750
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.520
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	9.080
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	9.080
SRP279888	Gastro	Gastrodia elata tuber	10.37
	Juven	Juvenile tuber	10.31
	Mother_Gastro	Mother tuber of Gastrodia elata	15.29
	Mother_Juven	Mother tuber of Juvenile	8.99