Detail information of GWHGAAEX000669/evm.TU.scaffold_10.30


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|269837874|ref|YP_003320102.1|2.00E-115aspartate carbamoyltransferase [Sphaerobacter thermophilus DSM 20745]
KOGKOG03700Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase)
nrgi|359494069|ref|XP_002277415.2|0PREDICTED: aspartate carbamoyltransferase, chloroplastic [Vitis vinifera]
Swissprottr|Q43087|PYRB2_PEA0Aspartate carbamoyltransferase 2, chloroplastic (Precursor)
trEMBLtr|F6HES7|F6HES7_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB50689.1}
TAIRAT3G203300PYRIMIDINE B

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000618775381884020+
Transcript Sequence

Network for GWHGAAEX000669

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02729.20OTCace_N972369.30E-46
PF00185.23OTCace2443951.10E-30
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00609pyrB, PYR2 Metabolic pathways map01100
Pyrimidine metabolismmap00240

Gene Ontology

GO term OntologyName
GO:0006520Biological Processcellular amino acid metabolic process
GO:0006207Biological Process'de novo' pyrimidine nucleobase biosynthetic process
GO:0004070Molecular Functionaspartate carbamoyltransferase activity
GO:0016597Molecular Functionamino acid binding
GO:0016743Molecular Functioncarboxyl- or carbamoyltransferase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms29.130
SRR2545915Juvenile tuber18.580
SRP108465SRR5643513five period of Gastrodia elata13.350
SRR5643514five period of Gastrodia elata13.090
SRR5643515five period of Gastrodia elata10.710
SRR5643524five period of Gastrodia elata10.930
SRR5643525five period of Gastrodia elata13.130
SRR5643528five period of Gastrodia elata14.570
SRR5643658five period of Gastrodia elata16.460
SRR5643659five period of Gastrodia elata11.950
SRR5643660five period of Gastrodia elata12.910
SRR5643661five period of Gastrodia elata9.770
SRR5643662five period of Gastrodia elata11.520
SRR5643663five period of Gastrodia elata14.260
SRR5643664five period of Gastrodia elata10.860
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_113.560
SRR6049655Rhizomagastrodiae_C368-T10_good_19.850
SRR6049656Rhizomagastrodiae_C368-T07_good_116.200
SRR6049657Rhizomagastrodiae_C368-T07_good_119.090
SRR6049658Rhizomagastrodiae_C368-T04_good_119.950
SRR6049659Rhizomagastrodiae_C368-T04_good_118.880
SRR6049660Rhizomagastrodiae_C368-T01_good_118.030
SRR6049661Rhizomagastrodiae_C368-T04_good_120.410
SRR6049662Rhizomagastrodiae_C368-T01_good_115.690
SRR6049663Rhizomagastrodiae_C368-T01_good_115.170
SRR6049664Rhizomagastrodiae_C368-T10_good_113.460
SRR6049665Rhizomagastrodiae_C368-T10_good_113.460
SRP279888GastroGastrodia elata tuber 14.10
JuvenJuvenile tuber8.48
Mother_GastroMother tuber of Gastrodia elata 9.92
Mother_JuvenMother tuber of Juvenile 6.42