Gene detail

Detail information of GWHGAAEX000675/evm.TU.scaffold_10.38

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2037	Guanylate-binding protein
nr	gi\|672132776\|ref\|XP_008789979.1\|	PREDICTED: guanylate-binding protein 4-like [Phoenix dactylifera]
trEMBL	tr\|M0S6E8\|M0S6E8_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P09070_001}
TAIR	AT5G46070	Guanylate-binding family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000006	2205945	2235814	+

Transcript Sequence
>GWHTAAEX000675 CCCTTCGATTTTCCGTTCCCCTCTTAAATTTCAAAATCTTACCTGCGACTCTCGATTGCCTTTACGGCTTTTCGCTCCATCGCCATTGTTGCGAAAAGAAAGAGCAGAATCTTATAGAACGATTTGCCAGCTACTAATTAGTCTGGGTAAAGCGAACGAGCGAAGAAAGCGAAGAAGATGATGCAGAGGCTGGGATTCCGTGGGGGGACGGCGGCTAAGGAAAAGGGGGTATCGCCGAGTTCCGATAATGGGAGCCCTAGCGGTAATCCTGCTTCCCAATCGGTTTCTTTGGGCCCGGGGAGGCCTCTGCGGCTTGTTTACTGCGATGATAAGGGAAAGTTTGTGATGGATCCAGAAGCCGTCTCTACTTTGCAGCTCGTTAAGGGACCCATCGGCGTCGTCTCCGTTTGTGGCCGCGCTAGACAGGGAAAGAGCTTTATTCTTAACCAGCTTCTTGGGAGGAGTAGTGGTTTCCAAGTTTCTTCCACTCACCGGCCTTGCACTAAGGGACTTTGGATGTGGAGTGCACCATTGAAGAGAACTGCCCTTGATGGAACCGAATACAATCTCTTACTTCTGGACAGTGAAGGGATTGATGCCTATGATCAAACGGGGACTTACAGTACCCAGATATTTTCGCTGGCTGTTCTTTTATCAAGCATGTTTATATACAATCAGATGGGTGGCATTGATGAGGCTGCACTTGACCGCTTATCCTTGGTTACTCAAATGACTAAACATATTCGTGTTCGTGCCTCTGGTGGGAGGACCACATCATCAGAGCTTGGACAATTCTCTCCAGTATTTGTTTGGCTACTGAGGGATTTCTATTTGGATTTGGTTGAGGAAAACAGAAGAATCACTCCACGTGATTATTTAGAGTTAGCCTTGAGACAGGTTCAAGGCGAAGGAAAGGACATATTAGCAAAGAATGAGATAAGGGAGTCCATTCGGGCTCTTTTCCCTGATAGAGATTGTTTTACTCTAGTACGGCCTTTGAACTCTGAAAGCGATTTGCAGCGTTTGGATCAAATACCTCTTGAAAGATTACGGCCTGAGTTTAGGGCTAGCCTGGATGCTTTGACAGAGTTTGTTTTCAAAAGAACCCGTCCTAAACAAGTTGGTTCTACTGTTATGACAGGACCTTTTCTGGCTGGGATTACACAGTCATTTTTGGATGCCATCAACAAGGGTGCTGTTCCTACAATATCTTCTTCTTGGCAGAGCGTTGAGGAGGCAGAATGTCGTCGAGCATTTGACTCAGCTTCTGAGATTTACAGATTGTCCTTTGACAGCACAAAACCAGCTGATGAAGCTATTCTAATAGAAGCACATGAAGTTGCTATACAAAATGCACTTAGTACCTTCAATTCTAATGCTGTGGGGACTGGCTTAGTTCGCTCTAATTATGAAAAACTTCTTCATAATTTTTTCAAGAAGACATTTGAGGAATTTAAAAGGAACGCCTTCCGGGCAGCAGATCTACACTGTTCAAAACTGATACAAACCATGGAGGAAAAGACACGAGCAGCTTTCAATGCTTCGAATGCTAAACTTGGTGATGTTGTTTTGGTTGTGAATGCTCTAGTTGATGATTACTCGTCATCTGCTCACGGTCCAGGAAAATTTGAAATGTTTGCTTCCTTCATTCAAAAGTGTCTGAAGGGACCAATACTGGATCTTCACAAGAAACAGCTGTTCGAAATGGAATCAGAAAACAGCAGCCTCAAATTAAGGTGCGGCTCGAGCGATGACAAGCTGGAGCTATTGAAGAAGCAGCTGGAAGCAAACGAGAAGCACAGGGCTGACTATCTGAAGCGCTACGAGGATGCTGTCAATGATAAGAAGAGATTCGCGGACGATTATTCGGCAAATATCGCAAACTGGAAGAGCAAATGCAGCACTCTGGAGGAGCACTGTTTGAGCATATCGCAGTCCTTGGAGCTTGCGCGGGCCGAATCCGCCTCGTGGAAGTCCAAGCACGAGCGCGTCATGGCGGAGCACAAGGCAGCTGAAGAGAGGCTGAGGCTTCAGACATCCGCTCTGGAGTCGAAGAACAGCGCGGCTGAGGGAAGGCTGGCCGCAATGCGGGAACAGTCGGACGCCGCCTTAGAGGAGGCTAAGGAGTGGAAGCGGAAATACGAGCTTGCCCTCGGGGAGGCCAAAGCCGCCCGCGATAAGTCTTCCCTGACCTTGGAGGTTTCCGGCAAGAAAGCGCAGCAGAGGGAGGATGCGCTCAGAGCCGAGTTATCAAAGAAGTTGGCTGACAAGGTTGAAGAAATTAGAAAGCTGACTACAAAGATTGACAATACTGAGATGCATGCAAGCAGCTTAATTGCACAACTGGAGGCTGCTGAGTCAAGGGTGAAGAGCAATGAGCAGGAGAACTCGGCATTGAAAGAGGAAATCAACGTCCTGATGGGCAGATTGGATGGCTACAGAGCCAGCTCCCAATCGCAGGAGAAGGAGCTCAGAATTTTGGAGCAGAAGAAGAGCCATCTCCAGGAGAAGTATCTGTCGGAATGCGAGAAGTTAGGCTTGGCCGAGGCCCGGCGCAGCAGCGCGGAGAGCGAGGCGAAGAGGGCGACAGAGGCCGCCGACGCCGCCCGGACCGAGGCGGCCGCCGCCCAGAGGGAGAAGAGCGAGGCTCAGCACCTGGCCATGGAGCGGCTGGCGCTGATCGAACGGTGCCAGCGGCAGCTGGAGGGGGTGGAGAGGGAGAGATCACGGCTGGCGGAGGACGCAGAGGCGTTGCGCGCTTCCGAGGTGGAGGCGGCGTCGAAGGTGGAGATGATGGAGCTGAGGCTGCAGGAGAGGGATAGAGAGCTGGAGGAGATGCTCAGCGCGAACAACGAGCAGAGGTCGAGCACCGTGCAGGTCCTCGAGTCCCTCCTCGCCACCGAGCGCGCCGCCCTCGCCGACGCCAACAGCAGGGCGGAGGCCCTCTCGATTCAGCTGCAGGCGACGCAGAGCAAGCTTGACGCGCTCCAGCAGGAGCTCACATCCGTCCGGATCAACGAGTCCGCCCACGATAACAGCAGGTTCAGGGCCGCTCAGGGGAAGCGGTCGAGGGCCGACCAATTCCCGGCAGCCGAATCGGTGCACCATATGGAGTTGGACGAGGACGAGGTTCGCAGGGCCGAGAAGCGCTCCAAGAGCGCGACGAGCCCCCTGAAGGCTTCAGAGGACGGCGGGTCCGTTTATAGAGGGGGCGACGATAGCGCTGCCGAAGATTATACCAAGTTCACTGTCATCAAGTTGAAGCAGGAGCTCACCAGGCATGGCTTTGGTGCCGAACTGCTGCAGCTCAAGAACCCCGCCAAGAAGGATATCCTCGCTCTGTATGCAAAGCATGTTCTTAAGCAATGATAGGTTTTTTTTCTCTCTTTTGTTCTTTATGTGCTTGTGTTCTTTAAAAGGCTTCTTGATTTTCTTCTTTTTAAATATTATTATTGAGTATTTTGGCAGCAATTTTTGGAATATTTAGCATGATAATATTAATTATATAATCAATTTTCAAAACTTCGGCGATGTAAATATTACAATCAACGGGAAGGGCATCTATTTCAATGTCTACAATGCAAACAAAACTTATTACAAATAGTTTTGGTGTTTAACAAATAGTTCATAACGTTTGATTTGTGTGAAAATAATGAAAAA

Network for GWHGAAEX000675

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02263.18	GBP	53	310	1.90E-63
PF02841.13	GBP_C	317	627	8.80E-38

Protein Sequence

>GWHPAAEX000675
MMQRLGFRGGTAAKEKGVSPSSDNGSPSGNPASQSVSLGPGRPLRLVYCDDKGKFVMDPEAVSTLQLVKGPIGVVSVCGRARQGKSFILNQLLGRSSGFQVSSTHRPCTKGLWMWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDEAALDRLSLVTQMTKHIRVRASGGRTTSSELGQFSPVFVWLLRDFYLDLVEENRRITPRDYLELALRQVQGEGKDILAKNEIRESIRALFPDRDCFTLVRPLNSESDLQRLDQIPLERLRPEFRASLDALTEFVFKRTRPKQVGSTVMTGPFLAGITQSFLDAINKGAVPTISSSWQSVEEAECRRAFDSASEIYRLSFDSTKPADEAILIEAHEVAIQNALSTFNSNAVGTGLVRSNYEKLLHNFFKKTFEEFKRNAFRAADLHCSKLIQTMEEKTRAAFNASNAKLGDVVLVVNALVDDYSSSAHGPGKFEMFASFIQKCLKGPILDLHKKQLFEMESENSSLKLRCGSSDDKLELLKKQLEANEKHRADYLKRYEDAVNDKKRFADDYSANIANWKSKCSTLEEHCLSISQSLELARAESASWKSKHERVMAEHKAAEERLRLQTSALESKNSAAEGRLAAMREQSDAALEEAKEWKRKYELALGEAKAARDKSSLTLEVSGKKAQQREDALRAELSKKLADKVEEIRKLTTKIDNTEMHASSLIAQLEAAESRVKSNEQENSALKEEINVLMGRLDGYRASSQSQEKELRILEQKKSHLQEKYLSECEKLGLAEARRSSAESEAKRATEAADAARTEAAAAQREKSEAQHLAMERLALIERCQRQLEGVERERSRLAEDAEALRASEVEAASKVEMMELRLQERDRELEEMLSANNEQRSSTVQVLESLLATERAALADANSRAEALSIQLQATQSKLDALQQELTSVRINESAHDNSRFRAAQGKRSRADQFPAAESVHHMELDEDEVRRAEKRSKSATSPLKASEDGGSVYRGGDDSAAEDYTKFTVIKLKQELTRHGFGAELLQLKNPAKKDILALYAKHVLKQ

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005525	Molecular Function	GTP binding
GO:0003924	Molecular Function	GTPase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	13.420
SRP064423	SRR2545915	Juvenile tuber	14.690
SRP108465	SRR5643513	five period of Gastrodia elata	15.280
	SRR5643514	five period of Gastrodia elata	14.400
	SRR5643515	five period of Gastrodia elata	14.150
	SRR5643524	five period of Gastrodia elata	14.650
	SRR5643525	five period of Gastrodia elata	14.050
	SRR5643528	five period of Gastrodia elata	13.340
	SRR5643658	five period of Gastrodia elata	12.920
	SRR5643659	five period of Gastrodia elata	20.580
	SRR5643660	five period of Gastrodia elata	23.820
	SRR5643661	five period of Gastrodia elata	20.960
	SRR5643662	five period of Gastrodia elata	22.010
	SRR5643663	five period of Gastrodia elata	20.720
	SRR5643664	five period of Gastrodia elata	22.090
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	19.520
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	16.090
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	19.870
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	20.000
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	21.100
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	23.080
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	21.870
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	21.780
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	22.660
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	22.510
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	17.870
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	17.870
SRP279888	Gastro	Gastrodia elata tuber	23.08
	Juven	Juvenile tuber	27.93
	Mother_Gastro	Mother tuber of Gastrodia elata	19.99
	Mother_Juven	Mother tuber of Juvenile	23.64