Detail information of GWHGAAEX000677/evm.TU.scaffold_10.40
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 1.00E-101 | FOG: PPR repeat |
| nr | gi|743779114|ref|XP_010920021.1| | 0 | PREDICTED: putative pentatricopeptide repeat-containing protein At1g16830 [Elaeis guineensis] |
| Swissprot | tr|Q3EDA9|PPR46_ARATH | 2.00E-103 | Putative pentatricopeptide repeat-containing protein At1g16830 |
| trEMBL | tr|M0S6L6|M0S6L6_MUSAM | 1.00E-174 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P09750_001} |
| TAIR | AT1G16830 | 1.00E-101 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000006 | 2386555 | 2389300 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000677
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13812.5 | PPR_3 | 97 | 153 | 0.0072 |
| PF01535.19 | PPR | 178 | 204 | 0.3 |
| PF13041.5 | PPR_2 | 245 | 292 | 4.50E-13 |
| PF13041.5 | PPR_2 | 314 | 357 | 1.30E-07 |
| PF13041.5 | PPR_2 | 382 | 430 | 2.70E-09 |
| PF01535.19 | PPR | 456 | 478 | 0.012 |
| PF13041.5 | PPR_2 | 487 | 535 | 1.50E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.880 |
| SRR2545915 | Juvenile tuber | 0.660 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.150 |
| SRR5643514 | five period of Gastrodia elata | 0.380 | |
| SRR5643515 | five period of Gastrodia elata | 0.450 | |
| SRR5643524 | five period of Gastrodia elata | 0.500 | |
| SRR5643525 | five period of Gastrodia elata | 0.230 | |
| SRR5643528 | five period of Gastrodia elata | 0.090 | |
| SRR5643658 | five period of Gastrodia elata | 0.090 | |
| SRR5643659 | five period of Gastrodia elata | 0.810 | |
| SRR5643660 | five period of Gastrodia elata | 0.990 | |
| SRR5643661 | five period of Gastrodia elata | 0.520 | |
| SRR5643662 | five period of Gastrodia elata | 0.960 | |
| SRR5643663 | five period of Gastrodia elata | 0.610 | |
| SRR5643664 | five period of Gastrodia elata | 0.400 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.610 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.550 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.670 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.840 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.490 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.500 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.690 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.240 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.590 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.590 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.390 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.390 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.08 |
| Juven | Juvenile tuber | 2.22 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.38 | |
| Mother_Juven | Mother tuber of Juvenile | 1.06 |