Detail information of GWHGAAEX000681/evm.TU.scaffold_10.45
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1677 | 7.00E-98 | CCCH-type Zn-finger protein |
| nr | gi|720015520|ref|XP_010260864.1| | 0 | PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X1 [Nelumbo nucifera] |
| Swissprot | tr|Q941Q3|C3H37_ARATH | 1.00E-162 | Zinc finger CCCH domain-containing protein 37 |
| trEMBL | tr|D7T0Z4|D7T0Z4_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI24121.3} |
| TAIR | AT3G12680 | 7.00E-98 | floral homeotic protein (HUA1) |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000006 | 2602706 | 2634013 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000681
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00642.23 | zf-CCCH | 158 | 182 | 5.40E-08 |
| PF00642.23 | zf-CCCH | 210 | 234 | 1.40E-09 |
| PF00642.23 | zf-CCCH | 262 | 286 | 6.40E-10 |
| PF00642.23 | zf-CCCH | 336 | 360 | 3.70E-09 |
| PF00642.23 | zf-CCCH | 418 | 441 | 7.50E-10 |
| PF00642.23 | zf-CCCH | 474 | 496 | 1.10E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C3H |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0046872 | Molecular Function | metal ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 100.040 |
| SRR2545915 | Juvenile tuber | 114.900 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 94.530 |
| SRR5643514 | five period of Gastrodia elata | 75.880 | |
| SRR5643515 | five period of Gastrodia elata | 84.780 | |
| SRR5643524 | five period of Gastrodia elata | 78.970 | |
| SRR5643525 | five period of Gastrodia elata | 65.700 | |
| SRR5643528 | five period of Gastrodia elata | 60.870 | |
| SRR5643658 | five period of Gastrodia elata | 61.420 | |
| SRR5643659 | five period of Gastrodia elata | 117.290 | |
| SRR5643660 | five period of Gastrodia elata | 126.900 | |
| SRR5643661 | five period of Gastrodia elata | 114.170 | |
| SRR5643662 | five period of Gastrodia elata | 115.160 | |
| SRR5643663 | five period of Gastrodia elata | 104.520 | |
| SRR5643664 | five period of Gastrodia elata | 116.710 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 122.430 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 135.660 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 109.210 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 137.940 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 136.440 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 160.280 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 132.400 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 133.910 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 96.380 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 111.910 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 105.920 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 105.920 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 123.06 |
| Juven | Juvenile tuber | 168.46 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 59.75 | |
| Mother_Juven | Mother tuber of Juvenile | 115.81 |