Detail information of GWHGAAEX000687/evm.TU.scaffold_10.54
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|218779469|ref|YP_002430787.1| | 8.00E-33 | peptidase S10 serine carboxypeptidase [Desulfatibacillum alkenivorans AK-01] |
| KOG | KOG1282 | 1.00E-93 | Serine carboxypeptidases (lysosomal cathepsin A) |
| nr | gi|514746375|ref|XP_004961095.1| | 2.30E-117 | PREDICTED: serine carboxypeptidase-like 50-like [Setaria italica] |
| Swissprot | tr|Q9M9Q6|SCP50_ARATH | 3.00E-94 | Serine carboxypeptidase-like 50 (Precursor) |
| trEMBL | tr|K3Z690|K3Z690_SETIT | 9.00E-118 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si022059m} |
| TAIR | AT1G15000 | 1.00E-93 | serine carboxypeptidase-like 50 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000006 | 3069877 | 3072000 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000687
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00450.21 | Peptidase_S10 | 27 | 411 | 3.20E-81 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006508 | Biological Process | proteolysis |
| GO:0004185 | Molecular Function | serine-type carboxypeptidase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 54.940 |
| SRR2545915 | Juvenile tuber | 98.620 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 142.440 |
| SRR5643514 | five period of Gastrodia elata | 84.810 | |
| SRR5643515 | five period of Gastrodia elata | 310.230 | |
| SRR5643524 | five period of Gastrodia elata | 186.450 | |
| SRR5643525 | five period of Gastrodia elata | 46.980 | |
| SRR5643528 | five period of Gastrodia elata | 204.580 | |
| SRR5643658 | five period of Gastrodia elata | 43.680 | |
| SRR5643659 | five period of Gastrodia elata | 673.490 | |
| SRR5643660 | five period of Gastrodia elata | 650.990 | |
| SRR5643661 | five period of Gastrodia elata | 647.750 | |
| SRR5643662 | five period of Gastrodia elata | 553.110 | |
| SRR5643663 | five period of Gastrodia elata | 329.160 | |
| SRR5643664 | five period of Gastrodia elata | 797.010 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 140.170 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 103.120 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 115.180 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 120.280 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 60.940 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 66.640 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 202.750 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 75.480 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 132.830 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 225.950 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 112.520 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 112.520 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 190.03 |
| Juven | Juvenile tuber | 117.54 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 351.00 | |
| Mother_Juven | Mother tuber of Juvenile | 412.00 |