Detail information of GWHGAAEX000690/evm.TU.scaffold_10.58


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428320486|ref|YP_007118368.1|7.00E-1530S ribosomal protein S20 [Oscillatoria nigro-viridis PCC 7112]
nrgi|743756641|ref|XP_010917969.1|4.61E-75PREDICTED: 30S ribosomal protein S20, chloroplastic isoform X1 [Elaeis guineensis]
Swissprottr|Q9ASV6|RR20_ARATH2.00E-5330S ribosomal protein S20, chloroplastic (Precursor)
trEMBLtr|A0A061F874|A0A061F874_THECC1.00E-6130S ribosomal protein S20 isoform 1 {ECO:0000313|EMBL:EOY13088.1}
TAIRAT3G151906.00E-53chloroplast 30S ribosomal protein S20, putative

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000632383723253696+
Transcript Sequence

Network for GWHGAAEX000690

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01649.17Ribosomal_S20p851711.30E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02968RP-S20, rpsT Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0003723Molecular FunctionRNA binding
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms16.130
SRR2545915Juvenile tuber17.910
SRP108465SRR5643513five period of Gastrodia elata29.120
SRR5643514five period of Gastrodia elata38.380
SRR5643515five period of Gastrodia elata26.500
SRR5643524five period of Gastrodia elata26.430
SRR5643525five period of Gastrodia elata16.770
SRR5643528five period of Gastrodia elata18.510
SRR5643658five period of Gastrodia elata14.700
SRR5643659five period of Gastrodia elata25.650
SRR5643660five period of Gastrodia elata24.570
SRR5643661five period of Gastrodia elata28.260
SRR5643662five period of Gastrodia elata26.450
SRR5643663five period of Gastrodia elata25.070
SRR5643664five period of Gastrodia elata20.590
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_123.390
SRR6049655Rhizomagastrodiae_C368-T10_good_142.470
SRR6049656Rhizomagastrodiae_C368-T07_good_131.100
SRR6049657Rhizomagastrodiae_C368-T07_good_122.020
SRR6049658Rhizomagastrodiae_C368-T04_good_112.220
SRR6049659Rhizomagastrodiae_C368-T04_good_110.250
SRR6049660Rhizomagastrodiae_C368-T01_good_116.980
SRR6049661Rhizomagastrodiae_C368-T04_good_114.640
SRR6049662Rhizomagastrodiae_C368-T01_good_127.160
SRR6049663Rhizomagastrodiae_C368-T01_good_118.170
SRR6049664Rhizomagastrodiae_C368-T10_good_141.290
SRR6049665Rhizomagastrodiae_C368-T10_good_141.290
SRP279888GastroGastrodia elata tuber 17.29
JuvenJuvenile tuber21.04
Mother_GastroMother tuber of Gastrodia elata 13.26
Mother_JuvenMother tuber of Juvenile 10.34