Detail information of GWHGAAEX000695/evm.TU.scaffold_10.65
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 2.00E-157 | FOG: PPR repeat |
| nr | gi|695011799|ref|XP_009392630.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At2g01510, mitochondrial-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9SZT8|PP354_ARATH | 5.00E-158 | Pentatricopeptide repeat-containing protein ELI1, chloroplastic {ECO:0000305} (Precursor) |
| trEMBL | tr|V4TIF6|V4TIF6_9ROSI | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESR49531.1} (Fragment) |
| TAIR | AT4G37380 | 2.00E-157 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000006 | 3429805 | 3431806 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000695
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 153 | 178 | 0.016 |
| PF01535.19 | PPR | 180 | 208 | 9.90E-08 |
| PF13041.5 | PPR_2 | 279 | 327 | 9.20E-10 |
| PF01535.19 | PPR | 355 | 378 | 0.0087 |
| PF14432.5 | DYW_deaminase | 454 | 577 | 5.20E-38 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.100 |
| SRR2545915 | Juvenile tuber | 3.530 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.400 |
| SRR5643514 | five period of Gastrodia elata | 2.260 | |
| SRR5643515 | five period of Gastrodia elata | 1.280 | |
| SRR5643524 | five period of Gastrodia elata | 1.670 | |
| SRR5643525 | five period of Gastrodia elata | 0.910 | |
| SRR5643528 | five period of Gastrodia elata | 0.480 | |
| SRR5643658 | five period of Gastrodia elata | 0.330 | |
| SRR5643659 | five period of Gastrodia elata | 2.710 | |
| SRR5643660 | five period of Gastrodia elata | 3.290 | |
| SRR5643661 | five period of Gastrodia elata | 3.540 | |
| SRR5643662 | five period of Gastrodia elata | 2.450 | |
| SRR5643663 | five period of Gastrodia elata | 2.440 | |
| SRR5643664 | five period of Gastrodia elata | 2.440 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.680 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.960 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.000 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.880 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.330 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.270 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.180 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.110 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.470 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.590 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.280 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.280 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.77 |
| Juven | Juvenile tuber | 1.53 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.54 | |
| Mother_Juven | Mother tuber of Juvenile | 0.59 |