Gene detail

Detail information of GWHGAAEX000697/evm.TU.scaffold_10.72

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0403	0	Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain
nr	gi\|743822462\|ref\|XP_010932283.1\|	0	PREDICTED: uncharacterized protein LOC105052991 [Elaeis guineensis]
Swissprot	tr\|Q93ZT6\|IF4G1_ARATH	4.00E-08	Eukaryotic translation initiation factor isoform 4G-1
trEMBL	tr\|V4TIQ7\|V4TIQ7_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR53237.1}
trEMBL	tr\|V4TIQ7\|V4TIQ7_9ROSI	1.00E-70	Uncharacterized protein {ECO:0000313\|EMBL:ESR53237.1}
TAIR	AT5G63190	0	MA3 domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000006	3930233	3946658	-

Transcript Sequence
>GWHTAAEX000697 GCCAACTGAACTTCCGTCACACGATCGGCCCTCTGTGCGGATAAGAAGAAGGCCAGTTACGTCATTTCGACCGATAGCGAAAACCCTAACCCAACACTCACTACCACTGGCGGCGTCGCGGCAGCCGCGACGATTTCCTAAATGCCACGTGTACATCGGATGAGATTTACTTCTCGACTCGCGTGATCCGGAATTGCTTCATCTGCTATAAATACCTGCGACTGCATCTCTTCGTTCTTGCGGAGAAATTTGGGAGGTCGAGAAGATAAAATACGAAAACTAGTAAGGAGACGGTGATCGCTTTTTAGGGTATCGGCGTGTTTCTACGTTTGGATGAGATTGCTCAGTCTTGGCTCGAGATCCCCGGGCCAAGACGAAGAACTATTATGATTGATTAGCCCCGCAGGCAGCTATCGGGCAAGTTTTCCAGGGCTTCTGCACTTCACCGCTGTTCACTAAAAGCTTGGCTGAGGAAGTGGATGGCATCGCCTAAGGAGGGTTTTCTGACGGATGAGCAGAGGGAGGTGATGAAGATTGCGGCACAGAATGCGGAAGTTCTTTCATCGTCTCCGAGATCGCCAACCGGATTGGGCTTGCTGCTACCTGAGCATAATAACAATAAGGGCGGAAAGCCGGCTTATGGGGGCAGTACGGTCCGGCATGTCCGCCGTTCACACTCTGGAAAACTTGTTAAAGTGAAAAAGGATGGCGCTGGCGGTAAAGGAACATGGGGTAAGCTAATTGATACTGGTTCTGTTGCGACCCTCGATCGAAATGATCCAAATTATGACAGCGGTGAGGAGCCTTATCAGCTGACGGGCACGACCATCTTTTCGCCAGTGCCTGAGTACAAAAGGGCTGTGGCGCCGATCATCGAGGAGTATTTCACCACCGGGGATGTAGAGCTGGCAGCTTCCGATCTCCGCAGCCTTGGTCACGGCCTGGACGAGTACCATTATTATTTTATCAAGAAACTCATCTCCATGGCCATGGACAGGCATGCTAAAGAGAAAGAAATGGCCTCAGTCCTGCTGTCTGCCCTTTACGCCGATGTCATCAGCGCGAGCCAGATCAGTCAGGGGTTCATTCTGCTCCTCGAGTCAGCGGAGGACTTAGCGGTCGACATACTCGATGCTGTCGACGTCCTGGCCCTCTTTGTTGCCCGGGCCATCGTCGACGACATCTTACCTCCGGCGTTTCTCAAGCGGGCCAAGGAATCCCTCCTCAAAAACTCCAAAGGGCTCCGGGTCGTTGAAACCGCCGAAAAAAGCTATCTCTCTGCCCCACATCACGCTGAGCTGATCGAGCGCAAGTGGGGTGGCAGCACTCAGCTCACCGTCGAGGAGGCGAAGAGAAAGATCTCATTCCTGCTCAGGGAGTACGTCGAGGGAGGAGACGCCCCTGAGGCCTGCCGCTGCATCAGGGAGTTGGGGGTCTCGTTCTTCCACCACGAGGTCGTCAAGTGCGCCCTCACCCTCGCCGTGGAGACGCAGCTGTCCCGACCCCTCATCTTCAAGCTCTTGAAGGAAGCCGCCGAAGAAGGTCTGATCAGCTCCAGTCAGATGGCCAAGGGCTTCTCCCGGTTCGCCGAGAGCCTTGACGACCTGACCCTCGACATTCCCTCCGCCAAAGCCATCTTCAAGCAACTCGTGCCGAAAGCAGTCTCTGATGGCTGGCTGGACCCCTCCTTTGACGCCTCCGGCGCCAGCCCAGGCTCCATAGACGCGGAGGATGAGAAGAAAAGACAGTTCAAGGAAGAGTCAGTAACCATAATCCACGAGTACTTCCTGTCGGATGACATCCCCGAGCTCGTCAGGAGCCTGGAGGACCTTGCCTCCCCGCAGTACAATCCCATCTTCATCAAGAAGCTGATAACACTCGCAATGGACAGGAAGAACAGGGAGAAGGAGATGGCGTCCGTCCTGTTGTCCGCCCTCGGGCTTGAGTTAGTATCCACCGACGACATCGTCCATGGCTTCATAATGCTGCTGGAGTCGGCGGAAGACACTGCGCTGGATATCCTCGACGCCTCAAATGAGCTCGCGCTCTTCCTTGCCCGAGCGGTGATCGACGACGTGCTGGCCCCACTGAACCTGGACGAGATCTGTGCGAAGCTCCCGTACGACTGCAGCGGCAGCGAGACCGTGCGCATGGCGCGCTCCCTCGTGTCGGCCCGTCACGCCGGGGAGCGGCTCCTGAGGTGCTGGGGCGGTGGCACTGGCTGGGCCGTGGAAGACGCCAAGGATAAGATCGTGAAGCTCCTCGAAGAGTTTGAGAGCGGGGGAGACGTTGGGGAGGCGTGCCAGTGCATCCGCGATCTTGGCATGCCCTTCTTCAACCACGAGGTCGTCAAGAAGGCGCTCGTCATGGCGATGGAGAAGAAGAATGAACGGCTCCTTGATCTGCTCCAGGAGTGCTTCGGGGAGGGCCTCATCACCTTCAACCAGATGGCCAAGGGTTTCTCCAGAGTCAAGGATGGGCTGGACGACCTCGCCCTCGACATCCCCAACGCGAGGGACAAGTTCGCCTCTTATGTGGATCACGCCAAGAATAATGGCTGGCTGCTGCCTTCTTTTGCCCCGTTCGAAGTGTTGTAGAAGATGATGTTGTGTCAAATATAAGCCGTAGTTGTATCTCAGCAGCAACAGCAGCAATTTCCTTTTAAAGTGTTTTAGCCATTTCATTTCTATGCTGGATGGAACTACTTACCACCTGTGGGTTGCTGTTTTTTTTATCCTAGCTTTTTTGGCTATGGAGACAGTTAAAAGAAACAAAAAGGTTGGAATCAATTGCTTACGCTTATTAGCACAAGAAGAGGTGAAGGGAACGCACGCACGCACGTTTGTTCAAGCTTTTTCCTCGTCGTATTTGTAGTGTTTGCATGAAACCGTAGTAGTCGGTTGATTGTTCGGGCGTTTTAGACTTTTTTATGCAACATGTATGGCTCTCGCCCAGATGTTTCCTGCTAGTTTTTAGACAATGAATGAAATTGTTAAGGCAAGTGACCTCGCTGCTTATGTGATACGACTTAATTCTGCTCTATTTTTAAATGTAAATTATGCTAAAGTTCAGATT

Network for GWHGAAEX000697

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module8

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02847.16	MA3	125	237	2.40E-23
PF02847.16	MA3	291	401	3.50E-28
PF02847.16	MA3	424	534	4.90E-24
PF02847.16	MA3	588	695	3.80E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	805.030
SRP064423	SRR2545915	Juvenile tuber	306.710
SRP108465	SRR5643513	five period of Gastrodia elata	156.930
	SRR5643514	five period of Gastrodia elata	142.990
	SRR5643515	five period of Gastrodia elata	128.010
	SRR5643524	five period of Gastrodia elata	127.090
	SRR5643525	five period of Gastrodia elata	236.490
	SRR5643528	five period of Gastrodia elata	162.590
	SRR5643658	five period of Gastrodia elata	309.750
	SRR5643659	five period of Gastrodia elata	196.670
	SRR5643660	five period of Gastrodia elata	299.270
	SRR5643661	five period of Gastrodia elata	244.070
	SRR5643662	five period of Gastrodia elata	294.850
	SRR5643663	five period of Gastrodia elata	260.290
	SRR5643664	five period of Gastrodia elata	487.460
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	281.790
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	171.530
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	225.980
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	335.690
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	364.340
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	405.860
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	306.030
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	269.560
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	158.370
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	208.740
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	164.310
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	164.310
SRP279888	Gastro	Gastrodia elata tuber	215.88
	Juven	Juvenile tuber	152.15
	Mother_Gastro	Mother tuber of Gastrodia elata	92.51
	Mother_Juven	Mother tuber of Juvenile	91.70