Detail information of GWHGAAEX000698/evm.TU.scaffold_10.74
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|269793990|ref|YP_003313445.1| | 5.00E-28 | RCC1 domain-containing protein, alpha-tubulin suppressor [Sanguibacter keddieii DSM 10542] |
| KOG | KOG1426 | 0 | FOG: RCC1 domain |
| nr | gi|743814270|ref|XP_010929984.1| | 0 | PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q9FN03|UVR8_ARATH | 4.00E-37 | Ultraviolet-B receptor UVR8 |
| trEMBL | tr|M0UAX6|M0UAX6_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP20670_001} |
| TAIR | AT3G26100 | 0 | Regulator of chromosome condensation (RCC1) family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000006 | 4031660 | 4039139 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000698
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00415.17 | RCC1 | 164 | 212 | 1.60E-10 |
| PF00415.17 | RCC1 | 328 | 376 | 1.10E-06 |
| PF00415.17 | RCC1 | 379 | 428 | 3.00E-14 |
| PF00415.17 | RCC1 | 431 | 480 | 7.90E-06 |
| PF00415.17 | RCC1 | 497 | 530 | 1.00E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 22.800 |
| SRR2545915 | Juvenile tuber | 16.490 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 27.540 |
| SRR5643514 | five period of Gastrodia elata | 37.880 | |
| SRR5643515 | five period of Gastrodia elata | 33.020 | |
| SRR5643524 | five period of Gastrodia elata | 34.260 | |
| SRR5643525 | five period of Gastrodia elata | 52.600 | |
| SRR5643528 | five period of Gastrodia elata | 58.050 | |
| SRR5643658 | five period of Gastrodia elata | 90.550 | |
| SRR5643659 | five period of Gastrodia elata | 21.010 | |
| SRR5643660 | five period of Gastrodia elata | 18.980 | |
| SRR5643661 | five period of Gastrodia elata | 22.140 | |
| SRR5643662 | five period of Gastrodia elata | 24.370 | |
| SRR5643663 | five period of Gastrodia elata | 22.310 | |
| SRR5643664 | five period of Gastrodia elata | 30.050 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 26.750 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 31.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 25.870 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 25.430 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 27.210 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 30.830 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 25.180 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 26.770 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 18.240 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 20.650 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 29.840 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 29.840 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 23.58 |
| Juven | Juvenile tuber | 30.80 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 62.83 | |
| Mother_Juven | Mother tuber of Juvenile | 34.11 |