Detail information of GWHGAAEX000699/evm.TU.scaffold_10.75
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|695053926|ref|XP_009415073.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g50280, chloroplastic [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9FGR7|PP426_ARATH | 0 | Pentatricopeptide repeat-containing protein At5g50280, chloroplastic (Precursor) |
| trEMBL | tr|A0A061G5M6|A0A061G5M6_THECC | 0 | Pentatricopeptide repeat superfamily protein isoform 1 {ECO:0000313|EMBL:EOY22344.1} |
| TAIR | AT5G50280 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000006 | 4108820 | 4136977 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000699
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 278 | 322 | 4.00E-10 |
| PF13041.5 | PPR_2 | 383 | 431 | 5.80E-18 |
| PF13041.5 | PPR_2 | 453 | 501 | 1.10E-09 |
| PF13812.5 | PPR_3 | 515 | 569 | 1.20E-10 |
| PF13812.5 | PPR_3 | 618 | 669 | 0.0015 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.980 |
| SRR2545915 | Juvenile tuber | 8.580 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.420 |
| SRR5643514 | five period of Gastrodia elata | 6.140 | |
| SRR5643515 | five period of Gastrodia elata | 6.020 | |
| SRR5643524 | five period of Gastrodia elata | 6.170 | |
| SRR5643525 | five period of Gastrodia elata | 10.290 | |
| SRR5643528 | five period of Gastrodia elata | 8.410 | |
| SRR5643658 | five period of Gastrodia elata | 10.780 | |
| SRR5643659 | five period of Gastrodia elata | 9.800 | |
| SRR5643660 | five period of Gastrodia elata | 8.850 | |
| SRR5643661 | five period of Gastrodia elata | 7.840 | |
| SRR5643662 | five period of Gastrodia elata | 8.630 | |
| SRR5643663 | five period of Gastrodia elata | 10.530 | |
| SRR5643664 | five period of Gastrodia elata | 8.410 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.250 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.500 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.830 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.430 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.270 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 5.410 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.820 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.240 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.920 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.430 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.080 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.080 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.61 |
| Juven | Juvenile tuber | 11.97 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.26 | |
| Mother_Juven | Mother tuber of Juvenile | 6.49 |